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Citing CMDGA
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Annotation type
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
89
ChIP-seq
5
RNA-seq
1
ATAC-seq
1
DNA methylation profiling by array assay
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
cell line
Biosample term
61
stomach
58
heart
50
muscle of arm
49
lung
46
brain
45
small intestine
44
adrenal gland
44
kidney
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
40
A549
39
left lung
33
right lung
32
thymus
31
right kidney
30
renal cortex interstitium
29
hematopoietic multipotent progenitor cell
29
renal pelvis
27
CD14-positive monocyte
27
left kidney
23
B cell
23
CD4-positive, alpha-beta memory T cell
22
spinal cord
22
spleen
21
liver
17
heart left ventricle
16
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
MCF-7
15
foreskin keratinocyte
14
K562
14
adipose tissue
14
body of pancreas
13
gastrocnemius medialis
13
mononuclear cell
13
muscle of trunk
13
ovary
13
thyroid gland
13
transverse colon
12
chorionic villus
12
psoas muscle
11
endocrine pancreas
10
Peyer's patch
10
adipocyte
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
foreskin fibroblast
10
heart right ventricle
10
natural killer cell
10
neurosphere
10
pituitary stalk
10
retina
10
testis
10
tibial nerve
10
upper lobe of left lung
9
CD8-positive, alpha-beta T cell
9
H9
9
HeLa-S3
9
T-helper 1 cell
9
cardiac muscle cell
9
caudate nucleus
9
layer of hippocampus
9
left renal cortex interstitium
9
left renal pelvis
9
neural progenitor cell
9
pancreas
9
right renal pelvis
9
skeletal muscle tissue
8
CD4-positive, alpha-beta T cell
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
breast epithelium
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
lower leg skin
8
regulatory T cell
8
right renal cortex interstitium
8
skeletal muscle myoblast
7
SK-N-SH
7
ascending aorta
7
coronary artery
7
epithelial cell of prostate
7
esophagus muscularis mucosa
7
hepatocyte
7
mesenchymal stem cell
7
omental fat pad
7
parathyroid adenoma
7
substantia nigra
7
temporal lobe
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
aorta
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
mammary gland epithelial cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
prostate gland
6
right atrium auricular region
6
stomach smooth muscle
6
thoracic aorta
6
tibial artery
6
tongue
6
trophoblast
6
vagina
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
foreskin melanocyte
5
frontal cortex
5
kidney tubule cell
5
limb
5
mesodermal cell
5
subcutaneous abdominal adipose tissue
5
urinary bladder
5
uterus
4
A673
4
Brodmann (1909) area 46
4
GM12878
4
HAP-1
4
HEK293
4
HT-29
4
HepG2
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
astrocyte
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
bipolar neuron
4
choroid plexus epithelial cell
4
dermis lymphatic vessel endothelial cell
4
epithelial cell of proximal tubule
4
globus pallidus
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
iPS DF 19.11
4
kidney epithelial cell
4
kidney glomerular epithelial cell
4
left cardiac atrium
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
mesendoderm
4
middle frontal gyrus
4
muscle cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neural cell
4
osteoblast
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
skeletal muscle cell
4
skin fibroblast
4
smooth muscle cell of the brain vasculature
3
A172
3
ACC112
3
ACHN
3
Ammon's horn
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
Date released
1
May, 2021
Software used
1
abc
Lab
1
Jesse Engreitz, Stanford University
Project
1
AMP
RFA
1
AMP
annotation_type!
accessible chromatin
files.file_type!
tsv
Showing 1 of 1 results
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Download
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP