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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
0
GRCh38
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
82
heart
80
stomach
70
brain
67
lung
66
muscle of arm
64
kidney
63
HeLa-S3
61
small intestine
60
A549
58
adrenal gland
58
placenta
55
muscle of leg
54
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
46
thymus
44
H1-hESC
44
right lung
41
hematopoietic multipotent progenitor cell
41
liver
40
right kidney
39
K562
39
renal cortex interstitium
38
renal pelvis
36
left kidney
33
B cell
33
neural progenitor cell
32
CD4-positive, alpha-beta memory T cell
32
spinal cord
30
heart left ventricle
30
spleen
26
adipose tissue
24
MCF-7
22
CD8-positive, alpha-beta memory T cell
21
body of pancreas
21
foreskin keratinocyte
21
islet of Langerhans
21
sigmoid colon
20
breast cancer cell
20
hepatocyte
20
mononuclear cell
20
tibial nerve
19
HFFc6
19
trophoblast cell
18
caudate nucleus
18
keratinocyte
18
psoas muscle
17
foreskin fibroblast
17
ovary
16
CD14-positive monocyte
16
chorionic villus
16
heart right ventricle
16
layer of hippocampus
16
muscle of trunk
16
retina
16
substantia nigra
16
thyroid gland
16
transverse colon
15
H9
15
T cell
15
coronary artery
15
endothelial cell
15
endothelial cell of umbilical vein
15
fibroblast
15
fibroblast of lung
15
gastrocnemius medialis
15
macrophage
15
mesenchymal stem cell
15
pancreas
15
regulatory T cell
15
skeletal muscle tissue
15
testis
15
upper lobe of left lung
14
CD4-positive, alpha-beta T cell
14
GM12878
14
adipocyte
14
endocrine pancreas
14
mammary gland epithelial cell
14
natural killer cell
14
right atrium auricular region
14
smooth muscle cell
14
tibial artery
13
ascending aorta
13
cardiac muscle cell
13
cerebellum
13
fibroblast of cardiac tissue
13
neurosphere
13
omental fat pad
13
prostate gland
12
HepG2
12
Peyer's patch
12
T-helper 17 cell
12
aorta
12
bronchial epithelial cell
12
neuroblastoma cell
12
subcutaneous adipose tissue
11
CD8-positive, alpha-beta T cell
11
T-helper 1 cell
11
T-helper 2 cell
11
fibroblast of dermis
11
lymphoblastoid cell line
11
putamen
11
skeletal muscle myoblast
11
temporal lobe
10
22Rv1
10
frontal cortex
10
gastric cancer cell
10
lymphocyte
10
mammary epithelial cell
10
neutrophil
9
Ammon's horn
9
Rhabdomyosarcoma
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
esophagus
9
esophagus squamous epithelium
9
left cardiac atrium
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
osteoblast
9
parathyroid adenoma
9
pericyte cell
9
right renal cortex interstitium
9
right renal pelvis
9
thoracic aorta
9
trophoblast
8
B-lymphoblastoid cell line
8
HEK293
8
breast epithelium
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
endothelial cell of hepatic sinusoid
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
neuronal stem cell
8
tongue
8
vagina
7
GM06990
7
GM12864
7
GM12865
7
GM12875
7
GM19238
7
GM19239
7
GM19240
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
SK-N-SH
7
T47D
7
angular gyrus
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
foreskin melanocyte
7
limb
7
mature neutrophil
7
monocyte
7
right lobe of liver
7
skeletal muscle satellite cell
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM08714
6
GM12891
6
GM12892
6
GM23248
6
HAP-1
6
HCT116
6
HL-60
6
HT-29
6
LNCaP clone FGC
6
WERI-Rb-1
6
WI38
6
chorion membrane
6
choroid plexus epithelial cell
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
hESC cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
accessible chromatin
month_released!
May, 2021
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP