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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
2
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
Available data
2
bed bed9
2
bigBed bed9
File set status
1
released
1
revoked
Genome assembly (visualization)
25
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
87
monocyte
51
HeLa-S3
37
H1-hESC
19
HFFc6
16
K562
13
neural progenitor cell
10
endothelial cell of hepatic sinusoid
9
hepatocyte
9
macrophage
9
pericyte cell
7
coronary artery
7
endothelial cell
6
GM12878
6
H9
6
fibroblast
6
iPSC derived cell line
6
lymphoblastoid cell line
6
lymphocyte
6
olfactory receptor cell
6
putamen
6
smooth muscle cell
6
substantia nigra
6
tibial artery
6
tibial nerve
5
amygdala
5
anterior cingulate cortex
5
ascending aorta
5
caudate nucleus
5
cerebellum
5
frontal cortex
5
hypothalamus
5
left cardiac atrium
5
nucleus accumbens
5
right atrium auricular region
5
subcutaneous adipose tissue
4
Ammon's horn
4
C1 segment of cervical spinal cord
4
CyT49
4
HUES8
4
body of pancreas
4
brain
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
gastrocnemius medialis(Muscle - Skeletal)
4
heart left ventricle
4
left ventricle myocardium
4
omental fat pad
4
right lobe of liver
3
blood cell
3
colon epithelial cell
3
islet of Langerhans
3
skin of body
2
CD4-positive helper T cell
2
HCT116
2
T cell
2
angular gyrus
2
aorta
2
astrocyte
2
blood vessel smooth muscle cell
2
cortical cell of adrenal gland
2
endothelial cell of umbilical vein
2
enteric smooth muscle cell
2
fat cell
2
gabaergic neuron
2
glutamatergic neuron
2
heart
2
heart right ventricle
2
keratinocyte
2
kidney
2
luminal epithelial cell of mammary gland
2
microglial cell
2
muscle
2
muscle of leg
2
pancreatic A cell
2
regulatory T cell
2
right cardiac atrium
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
temporal lobe
2
type B pancreatic cell
2
type II pneumocyte
1
CD4-positive, alpha-beta T cell
1
CD8-positive, alpha-beta T cell
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Leydig cell
1
T follicular helper cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipose tissue
1
adrenal gland
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
breast
1
cardiac endothelial cell
1
cerebellar hemisphere
1
ciliated cell
1
club cell
1
colon goblet cell
1
colon sigmoid
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
fibroblast of cardiac tissue
1
fibroblast of the aortic adventitia
1
foveolar cell of stomach
1
germinal matrix
1
granular cell of epidermis
1
helper T cell
1
intestinal tuft cell
1
layer of hippocampus
1
liver
1
lung
1
luteal cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
memory B cell
1
mesenchymal stem cell
1
mesothelial cell
1
minor salivary gland
1
myoepithelial cell
1
naive B cel
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
non keratinizing barrier epithelial cell
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
ovary
1
pancreas
1
pancreatic acinar cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
paneth cell
1
parietal cell
1
peptic cell
1
pituitary gland
1
placenta
1
plasma cell
1
prostate gland
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
retina
1
schwann cell
1
sensory neuron
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
stomach
1
stomach neuroendocrine cell
1
stromal cell
1
testis
1
thoracic aorta
1
thyroid follicular cell
1
thyroid gland
1
transverse colon
1
type I cell of adrenal cortex
1
type I muscle cell
1
type I pneumocyte
1
type II cell of adrenal cortex
1
type II muscle cell
1
uterine smooth muscle cell
1
uterus
1
vagina
1
ventricular cardiac muscle cell
1
visceral abdominal adipose tissue
Organ
2
heart
Life stage
1
embryonic
1
fetal
Date released
September, 2022
1
April, 2019
1
May, 2020
Software used
2
chromhmm
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
accessible chromatin
biosample_term_name!
hepatic stellate cell
month_released!
September, 2022
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR032VAF
revoked
Annotation file set
: ChromHMM 5-state model for heart fetal from 5 GSE63634 ChIP-seq data (very large promoter regions, revoked)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR552DTP
released
Annotation file set
: ChromHMM 15-state model for fetal hearts from ENCODE ChIP-seq data. ROADMAP fetal heart Annotation
Lab:
AMP-T2D consortium
Project:
AMP