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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
4
target gene predictions
Annotation Category
4
Target gene links
Annotation type Category
4
ATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
3
cell line
Biosample term
93
monocyte
54
common myeloid progenitor, CD34-positive
43
CD8-positive, alpha-beta T cell
32
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
22
CD8-positive, alpha-beta memory T cell
20
mononuclear cell
19
foreskin keratinocyte
17
endothelial cell of umbilical vein
17
trophoblast cell
16
fibroblast of lung
15
endothelial cell
15
foreskin fibroblast
15
keratinocyte
15
natural killer cell
14
CD4-positive, alpha-beta T cell
14
T cell
14
neutrophil
14
regulatory T cell
13
neurosphere
12
T-helper 1 cell
12
fibroblast of dermis
12
hepatocyte
12
mammary epithelial cell
12
mammary gland epithelial cell
12
pericyte cell
12
skeletal muscle myoblast
11
T-helper 17 cell
11
T-helper 2 cell
11
bronchial epithelial cell
11
fibroblast
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
smooth muscle cell
10
dermis blood vessel endothelial cell
10
fibroblast of cardiac tissue
10
osteoblast
9
epithelial cell of prostate
9
mature neutrophil
9
naive T cell
8
astrocyte
8
fibroblast of breast
8
myoepithelial cell of mammary gland
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney tubule cell
7
pancreatic ductal cell
7
retinal pigment epithelial cell
7
skeletal muscle satellite cell
7
skin fibroblast
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
endothelial cell of hepatic sinusoid
6
epithelial cell of esophagus
6
epithelial cell of proximal tubule
6
erythroblast
6
foreskin melanocyte
6
macrophage
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
glomerular endothelial cell
5
kidney epithelial cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
mesenchymal stem cell
5
pancreatic delta cell
5
renal cortical epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
inflammatory macrophage
4
iris pigment epithelial cell
4
kidney glomerular epithelial cell
4
mast cell
4
myofibroblast cell
4
non-pigmented ciliary epithelial cell
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
skeletal muscle fiber
4
stromal cell of bone marrow
4
tracheal epithelial cell
4
type I muscle cell
4
type II muscle cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic adventitial fibroblast
3
basal cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
kidney capillary endothelial cell
3
mammary stem cell
3
mononuclear cell of bone marrow
3
myotube
3
pancreatic A cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
preadipocyte
3
regular cardiac myocyte
3
renal epithelial cell
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
Adipose stromal cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
Ishikawa
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th1 cell
2
Th17 cell
2
activated CD4-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipocyte
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
brain pericyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
enteric smooth muscle cell
2
erythroid cell
2
erythroid progenitor cell
2
gabaergic neuron
2
glutamatergic neuron
2
goblet cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
mantle cell lymphoma cell
2
megakaryocyte
2
memory B cell
2
meso-epithelial cell
2
mesothelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neoplastic cell
2
neuronal stem cell
2
pancreatic endocrine cell
2
pancreatic polypeptide-secreting cell
2
parietal cell
2
peptic cell
2
peripheral blood stem cell
2
peripheral blood-derived erythroblast
2
prostate gland cancer cell
2
pulmonary interstitial fibroblast
2
renal proximal tubule cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-cell lymphoma cell
1
B-lymphocyte
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
Th2 cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
alveolar macrophage
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
basal cell of epidermis
1
bone cell
1
bone marrow cell
1
bronchial goblet cell
Organ
4
epithelium
3
intestine
3
large intestine
1
lung
Date released
4
November, 2021
Software used
4
abc
Lab
4
Bing Ren, UCSD
Project
4
ENCODE
RFA
4
ENCODE3
annotation_type!
accessible chromatin
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR267UWF
released
Annotation file set
: Target gene predictions of Colon Epithelial Cell 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR015DAN
released
Annotation file set
: Target gene predictions of Colon Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR659KQD
released
Annotation file set
: Target gene predictions of Colon Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR923OSI
released
Annotation file set
: Target gene predictions of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE