Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
variant allelic effects
Annotation Category
1
Genetic variant effects
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
111
monocyte
54
common myeloid progenitor, CD34-positive
43
CD8-positive, alpha-beta T cell
34
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
22
CD8-positive, alpha-beta memory T cell
22
regulatory T cell
21
epithelial cell of proximal tubule
20
T-helper 1 cell
20
mononuclear cell
19
foreskin keratinocyte
19
hepatocyte
18
T-helper 17 cell
18
endothelial cell of umbilical vein
18
glomerular endothelial cell
17
trophoblast cell
16
T cell
16
fibroblast of lung
16
natural killer cell
15
T-helper 2 cell
15
foreskin fibroblast
15
neutrophil
14
skeletal muscle myoblast
13
CD4-positive, alpha-beta T cell
13
keratinocyte
13
macrophage
13
neurosphere
12
fibroblast of dermis
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
osteoblast
11
bronchial epithelial cell
11
endothelial cell
11
mammary gland epithelial cell
11
pancreatic ductal cell
10
dermis blood vessel endothelial cell
9
epithelial cell of prostate
9
fibroblast
9
fibroblast of cardiac tissue
9
glomerular visceral epithelial cell
9
mature neutrophil
9
naive T cell
8
fibroblast of breast
8
kidney tubule cell
8
myoepithelial cell of mammary gland
8
pancreatic acinar cell
8
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic delta cell
7
astrocyte
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney loop of Henle thin ascending limb epithelial cell
7
retinal pigment epithelial cell
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
hepatic stellate cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
kidney interstitial cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
skeletal muscle satellite cell
6
skin fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
fibroblast of the aortic adventitia
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
adult endothelial progenitor cell
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
inflammatory macrophage
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
mast cell
4
myofibroblast cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
stromal cell of bone marrow
4
tracheal epithelial cell
4
vascular associated smooth muscle cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic adventitial fibroblast
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
luminal epithelial cell of mammary gland
3
mammary stem cell
3
memory B cell
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
pancreatic polypeptide-secreting cell
3
pancreatic quiescent stellate cell
3
pericyte cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
preadipocyte
3
regular cardiac myocyte
3
renal epithelial cell
3
smooth muscle cell of the coronary artery
2
cardiac fibroblast
2
Adipose stromal cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Ishikawa
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th1 cell
2
Th17 cell
2
activated CD4-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
basal cell
2
brain pericyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD4-positive, alpha-beta T cell
2
endothelial cell of coronary artery
2
erythroid cell
2
erythroid progenitor cell
2
goblet cell
2
head and neck squamous cell carcinoma
2
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
2
mantle cell lymphoma cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
naive B cell
2
neoplastic cell
2
neuronal stem cell
2
pancreatic endocrine cell
2
peripheral blood stem cell
2
peripheral blood-derived erythroblast
2
prostate gland cancer cell
2
pulmonary interstitial fibroblast
2
renal proximal tubule cell
2
renal vesicle
2
skeletal muscle fiber
2
small cell ovarian carcinoma cell
2
smooth muscle cell
2
somatic muscle myotube
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1a B cell
Date released
1
October, 2022
Software used
1
deseq2
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
1
ENCODE3
annotation_type!
accessible chromatin
files.file_type!
bed gappedPeak
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR308TXA
released
Annotation file set
: Variant allelic effects annotation from MPRA to prioritize disease-associated variants for five autoimmune diseases.
Lab:
AMP-T2D consortium
Project:
AMP