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Citing CMDGA
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Annotation type
2
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
bed bed9
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
cell line
1
tissue
Biosample term
13
prostate gland
11
epithelial cell of prostate
10
22Rv1
7
LNCaP clone FGC
6
PC-3
6
RWPE1
5
LNCAP
4
C4-2B
4
RWPE2
4
VCaP cell
1
VCaP
1
prostate
Disease term
3
prostate cancer
Organ
5
prostate gland
Life stage
5
adult
Date released
3
September, 2022
1
February, 2021
1
March, 2024
Software used
3
r
1
chromhmm
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
accessible chromatin
month_released!
February, 2024
Showing 5 of 5 results
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FileSet
DSR617MMD
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Prostate.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR228WYR
released
Annotation file set
: Candidate regulatory elements for BSS00157 C4-2B from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR084FEO
released
Annotation file set
: Target gene predictions for BSS00157 C4-2B from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR823DZO
released
Annotation file set
: Chromatin states for BSS00157 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718KIU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE C4-2B
Lab:
AMP-T2D consortium
Project:
AMP