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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
ATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
112
monocyte
54
common myeloid progenitor, CD34-positive
46
CD8-positive, alpha-beta T cell
34
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
25
hepatocyte
24
endothelial cell
23
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
20
T-helper 1 cell
20
mononuclear cell
19
T-helper 17 cell
19
foreskin keratinocyte
18
endothelial cell of umbilical vein
18
natural killer cell
17
trophoblast cell
16
T cell
16
fibroblast of lung
16
macrophage
15
T-helper 2 cell
15
foreskin fibroblast
15
keratinocyte
15
neutrophil
14
CD4-positive, alpha-beta T cell
14
skeletal muscle myoblast
13
fibroblast
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
pancreatic ductal cell
12
fibroblast of dermis
12
mammary epithelial cell
12
mammary gland epithelial cell
12
osteoblast
12
pericyte cell
11
bronchial epithelial cell
11
pancreatic delta cell
11
smooth muscle cell
10
dermis blood vessel endothelial cell
10
endothelial cell of hepatic sinusoid
10
fibroblast of cardiac tissue
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
9
astrocyte
9
epithelial cell of prostate
9
mature neutrophil
9
naive T cell
8
fibroblast of breast
8
myoepithelial cell of mammary gland
8
skeletal muscle satellite cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
retinal pigment epithelial cell
7
skin fibroblast
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
hepatic stellate cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
mast cell
5
memory B cell
5
mesangial cell
5
mesenchymal stem cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
CD4-positive helper T cell
4
adult endothelial progenitor cell
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
iris pigment epithelial cell
4
myofibroblast cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
plasma cell
4
skeletal muscle fiber
4
stromal cell of bone marrow
4
tracheal epithelial cell
4
type I muscle cell
4
type II muscle cell
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic adventitial fibroblast
3
basal cell
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
mammary stem cell
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive B cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
pre-B acute lymphoblastic leukemia cell
3
preadipocyte
3
regular cardiac myocyte
3
renal epithelial cell
3
smooth muscle cell of the coronary artery
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
Adipose stromal cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Ishikawa
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th1 cell
2
Th17 cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipocyte
2
aortic endothelial cell
2
articular chondrocyte
2
blood vessel smooth muscle cell
2
brain pericyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD4-positive, alpha-beta T cell
2
endothelial cell of coronary artery
2
enteric smooth muscle cell
2
erythroid cell
2
erythroid progenitor cell
2
fat cell
2
gabaergic neuron
Organ
6
epithelium
kidney
1
lung
Date released
1
November, 2021
Software used
1
abc
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
annotation_type!
accessible chromatin
organ_slims!
kidney
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR923OSI
released
Annotation file set
: Target gene predictions of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE