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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
1
binding sites
1
differential activity
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
HiC
1
RNA-seq
Available data
4
bed bed3+
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
85
heart
81
stomach
brain
68
lung
66
muscle of arm
63
HeLa-S3
63
kidney
61
small intestine
60
A549
59
adrenal gland
58
placenta
55
muscle of leg
54
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
51
H1-hESC
46
thymus
44
right lung
42
liver
41
hematopoietic multipotent progenitor cell
41
neural progenitor cell
41
right kidney
39
renal cortex interstitium
38
K562
38
renal pelvis
36
left kidney
33
B cell
33
islet of Langerhans
32
CD4-positive, alpha-beta memory T cell
32
spinal cord
31
heart left ventricle
31
spleen
28
adipose tissue
24
MCF-7
23
body of pancreas
22
CD8-positive, alpha-beta memory T cell
22
tibial nerve
21
epithelial cell of proximal tubule
21
foreskin keratinocyte
21
hepatocyte
21
sigmoid colon
20
breast cancer cell
20
mononuclear cell
20
regulatory T cell
19
HFFc6
19
caudate nucleus
19
trophoblast cell
18
T-helper 1 cell
18
glomerular endothelial cell
18
ovary
18
psoas muscle
17
foreskin fibroblast
17
heart right ventricle
17
retina
17
substantia nigra
16
CD14-positive monocyte
16
T-helper 17 cell
16
chorionic villus
16
coronary artery
16
muscle of trunk
16
omental fat pad
16
right atrium auricular region
16
skeletal muscle tissue
16
subcutaneous adipose tissue
16
testis
16
thyroid gland
16
transverse colon
15
H9
15
cerebellum
15
endothelial cell of umbilical vein
15
gastrocnemius medialis
15
layer of hippocampus
15
natural killer cell
15
pancreas
15
tibial artery
15
upper lobe of left lung
14
ascending aorta
14
endocrine pancreas
13
CD4-positive, alpha-beta T cell
13
GM12878
13
T cell
13
aorta
13
fibroblast of lung
13
frontal cortex
13
keratinocyte
13
neurosphere
13
prostate gland
12
HepG2
12
Peyer's patch
12
T-helper 2 cell
12
bronchial epithelial cell
12
cardiac muscle cell
12
fibroblast of cardiac tissue
12
mammary gland epithelial cell
12
neuroblastoma cell
12
putamen
12
skeletal muscle myoblast
12
temporal lobe
11
fibroblast of dermis
11
lymphoblastoid cell line
11
mesenchymal stem cell
10
22Rv1
10
Ammon's horn
10
adipocyte
10
gastric cancer cell
10
left renal cortex interstitium
10
lymphocyte
10
neutrophil
10
osteoblast
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
9
CD8-positive, alpha-beta T cell
9
Rhabdomyosarcoma
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
esophagus
9
esophagus squamous epithelium
9
left renal pelvis
9
liposarcoma
9
mammary epithelial cell
9
parathyroid adenoma
9
right renal pelvis
9
thoracic aorta
9
trophoblast
9
vagina
8
B-lymphoblastoid cell line
8
HEK293
8
breast epithelium
8
dermis blood vessel endothelial cell
8
endodermal cell
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
induced pluripotent stem cell
8
lower leg skin
8
macrophage
8
myoepithelial cell of mammary gland
8
naive T cell
8
neuronal stem cell
8
tongue
7
GM06990
7
GM12864
7
GM12865
7
GM12875
7
GM19238
7
GM19239
7
GM19240
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
SK-N-SH
7
T47D
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
endothelial cell
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
foreskin melanocyte
7
glomerular visceral epithelial cell
7
hepatic stellate cell
7
kidney tubule cell
7
limb
7
mature neutrophil
7
right lobe of liver
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM08714
6
GM12891
6
GM12892
6
GM23248
6
HAP-1
6
HCT116
6
HL-60
6
HT-29
6
WERI-Rb-1
6
WI38
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chorion membrane
6
choroid plexus epithelial cell
Organ
3
epithelium
3
pancreas
Date released
May, 2021
2
February, 2021
1
February, 2023
1
March, 2020
1
May, 2020
Software used
2
macs
1
deltasvm
1
hiccups
Lab
5
AMP-T2D consortium
2
Anna Gloyn, Oxford
Project
5
AMP
RFA
5
AMP
annotation_type!
accessible chromatin
biosample_term_name!
brain
month_released!
May, 2021
Showing 5 of 5 results
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Download
FileSet
DSR309JFA
released
Annotation file set
: Differential activity of transcriptomic analysis in EndoC-βH1 cells following siCALCOCO2 mediated knockdown
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR257RKK
released
Annotation file set
: Histone modifications annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170VOW
released
Annotation file set
: Binding sites annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP