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Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
1
ATAC-seq
1
DNase-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
2
cardiac fibroblast
2
CD4-positive, alpha-beta T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
B cell
1
CD8-positive, alpha-beta T cell
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
erythroblast
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
hepatic stellate cell
1
hepatocyte
1
inflammatory macrophage
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
lymphocyte of B lineage (iPSC)
1
macrophage
1
megakaryocyte
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
neutrophil
1
renal cortical epithelial cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
smooth muscle cell of the brain vasculature
Date released
2
May, 2020
Software used
2
deltasvm
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
accessible chromatin
biosample_type!
tissue
organ_slims!
thyroid gland
Showing 2 of 2 results
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Download
FileSet
DSR181VXG
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic progenitor ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835LQY
released
Annotation file set
: Genetic variants with deltaSVM predictions in beta cell iPS-derived pancreatic progenitor ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP