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Schema
Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
pCHi-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
cell line
Biosample term
83
heart
82
stomach
68
kidney
lung
67
brain
66
muscle of arm
64
HeLa-S3
62
small intestine
61
adrenal gland
59
A549
56
muscle of leg
56
placenta
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
51
H1-hESC
45
thymus
44
right lung
42
liver
41
right kidney
40
hematopoietic multipotent progenitor cell
39
renal cortex interstitium
38
K562
38
renal pelvis
37
B cell
36
islet of Langerhans
36
left kidney
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spinal cord
30
heart left ventricle
30
spleen
28
adipose tissue
25
endothelial cell
24
body of pancreas
24
hepatocyte
24
monocyte
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
sigmoid colon
22
tibial nerve
21
MCF-7
21
neural progenitor cell
21
regulatory T cell
21
trophoblast cell
20
T-helper 1 cell
20
adipocyte
20
macrophage
20
natural killer cell
19
HFFc6
19
T-helper 17 cell
19
caudate nucleus
19
foreskin keratinocyte
19
glomerular endothelial cell
19
mononuclear cell
19
ovary
19
psoas muscle
18
subcutaneous adipose tissue
17
coronary artery
17
heart right ventricle
17
muscle of trunk
17
smooth muscle cell
17
substantia nigra
17
thyroid gland
17
transverse colon
16
CD8-positive, alpha-beta T cell
16
H9
16
chorionic villus
16
endothelial cell of umbilical vein
16
fibroblast of lung
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
omental fat pad
16
right atrium auricular region
15
T cell
15
ascending aorta
15
fibroblast
15
retina
15
skeletal muscle tissue
15
tibial artery
14
CD4-positive, alpha-beta T cell
14
T-helper 2 cell
14
endocrine pancreas
14
mesenchymal stem cell
14
pancreas
14
testis
13
EndoC_BH1
13
GM12878
13
Peyer's patch
13
aorta
13
cerebellum
13
foreskin fibroblast
13
frontal cortex
13
layer of hippocampus
13
neurosphere
13
neutrophil
12
fibroblast of dermis
12
pancreatic ductal cell
12
temporal lobe
12
upper lobe of left lung
11
mammary gland epithelial cell
11
pericyte cell
11
putamen
11
skeletal muscle myoblast
10
Ammon's horn
10
SK-N-SH
10
cardiac muscle cell
10
fibroblast of cardiac tissue
10
keratinocyte
10
left cardiac atrium
10
left renal cortex interstitium
10
right renal cortex interstitium
9
HepG2
9
angular gyrus
9
breast epithelium
9
cardiomyocytes
9
colonic mucosa
9
esophagus
9
esophagus squamous epithelium
9
left renal pelvis
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
pancreatic beta cell
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal pelvis
9
thoracic aorta
9
vagina
8
22Rv1
8
SK-N-DZ
8
bronchial epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic acinar cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
prostate gland
8
skeletal muscle satellite cell
8
tongue
7
LNCaP clone FGC
7
T47D
7
WI38
7
cardiomyocytes (cardiac muscle cell)
7
embryonic stem cell
7
endometrium adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
glomerular visceral epithelial cell
7
kidney tubule cell
7
limb
7
pancreatic alpha cell
7
right lobe of liver
7
stomach smooth muscle
7
trophoblast
6
Brodmann (1909) area 46
6
HCT116
6
HEK293
6
IMR-90
6
NAMALWA cell
6
amygdala
6
anterior cingulate cortex
6
astrocyte
6
cardiac precursors (cardiac muscle cell)
6
chorion membrane
6
fibroblast of breast
6
hepatic stellate cell
6
kidney glomerular epithelial cell
6
lymphoblastoid cell line
6
mucosa of rectum
6
osteoblast
6
uterus
5
A673
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
Date released
1
March, 2020
Software used
macs
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type!
accessible chromatin
biosample_term_name!
lung
software_used.software.name!
macs
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR362JPD
released
Annotation file set
: A target gene prediction annotation in Human Fibroblasts of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP