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Schema
Citing CMDGA
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Annotation type
accessible chromatin
3
variant allelic effects
Annotation Category
3
Genetic variant effects
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
62
small intestine
55
large intestine
22
sigmoid colon
18
transverse colon
13
Peyer's patch
10
colonic mucosa
10
esophagus
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
9
duodenal mucosa
9
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
7
HT-29
6
HCT116
6
SW480
6
colon epithelial cell
6
epithelial cell of esophagus
4
rectum smooth muscle tissue
3
HCT-116 cell
3
RKO
3
enterocyte
2
enteric smooth muscle cell
2
smooth muscle cell of the esophagus
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
enterocyte of epithelium of small intestine
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
intestinal epithelial cell
1
intestinal epithelium
1
paneth cell
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
1
small intestine goblet cell
Organ
3
epithelium
3
intestine
0
esophagus
Date released
3
February, 2024
Software used
3
deltasvm
Lab
3
Bing Ren, UCSD
Project
3
AMP
RFA
3
AMP
annotation_type!
accessible chromatin
Showing 3 of 3 results
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Download
FileSet
DSR972LVJ
released
Annotation file set
: Variant allelic effects annotation of Enterocytes (sub-type3) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR623GGP
released
Annotation file set
: Variant allelic effects annotation of Enterocytes (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR654PGN
released
Annotation file set
: Variant allelic effects annotation of Enterocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP