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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
7
ChIP-seq
7
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
5
cell line
3
tissue
Biosample term
21
foreskin keratinocyte
19
keratinocyte
18
foreskin fibroblast
12
fibroblast of dermis
10
dermis blood vessel endothelial cell
10
lower leg skin
9
skin fibroblast
8
dermis lymphatic vessel endothelial cell
6
GM23248
6
skin of body
5
SK-MEL-5
5
iPS DF 19.11
5
iPS DF 4.7 Cell Line
4
RPMI7951
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
3
COLO829
3
dermis microvascular lymphatic vessel endothelial cell
3
epidermal melanocyte
3
suprapubic skin
2
skin of forearm
2
skin of prepuce of penis
1
BJ
1
HGPS cell
1
basal cell of epidermis
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
granular cell of epidermis
1
iPS DF 4.7
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
Organ
8
skin of body
Life stage
3
adult
3
newborn
1
postnatal
Date released
4
February, 2021
3
September, 2022
1
May, 2021
Software used
4
encode-ccres
2
r
1
abc
1
chromhmm
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
accessible chromatin
Showing 8 of 8 results
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Download
FileSet
DSR895SKI
released
Annotation file set
: Candidate regulatory elements for BSS00731 iPS DF 19.11 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR985UCV
released
Annotation file set
: Target gene predictions for BSS00731 iPS DF 19.11 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR241URV
released
Annotation file set
: Chromatin states for BSS00731 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR110ADT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE suprapubic skin
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR649ENW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE suprapubic skin
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR396AOH
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE suprapubic skin
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR584ZJC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE iPS DF 19.11
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR544HLF
released
Annotation file set
: enhancer-gene predicton of iPS_DF_19.11_Cell_Line-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP