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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
113
monocyte
55
HeLa-S3
50
H1-hESC
46
CD8-positive, alpha-beta T cell
38
islet of Langerhans
29
kidney
29
neural progenitor cell
28
heart
26
stomach
25
endothelial cell
23
brain
23
hepatocyte
23
liver
22
K562
20
breast cancer cell
20
lung
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
epithelial cell of proximal tubule
19
macrophage
18
muscle of arm
18
subcutaneous adipose tissue
17
muscle of leg
17
pancreatic ductal cell
17
placenta
17
small intestine
16
glomerular endothelial cell
16
heart left ventricle
16
induced pluripotent stem cell
16
large intestine
15
EndoC_BH1
15
common myeloid progenitor, CD34-positive
15
fibroblast
15
muscle of back
14
CD4-positive, alpha-beta T cell
13
H9
13
adipocyte
13
keratinocyte
13
left lung
12
B cell
12
GM12878
12
hematopoietic multipotent progenitor cell
12
neuroblastoma cell
12
regulatory T cell
12
renal cortex interstitium
12
smooth muscle cell
12
spleen
12
substantia nigra
12
tibial nerve
11
T-helper 1 cell
11
adipose tissue
11
body of pancreas
11
cardiac muscle cell
11
endothelial cell of umbilical vein
11
lymphoblastoid cell line
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
spinal cord
10
MCF-7
10
caudate nucleus
10
coronary artery
10
embryonic stem cell
10
foreskin fibroblast
10
gastric cancer cell
10
omental fat pad
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
renal pelvis
10
right lung
9
Rhabdomyosarcoma
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
heart right ventricle
9
liposarcoma
9
neuronal stem cell
9
pancreas
9
pancreatic beta cell
9
putamen
9
right kidney
8
B-lymphoblastoid cell line
8
HepG2
8
T-helper 17 cell
8
endothelial cell of hepatic sinusoid
8
fibroblast cell line
8
mesenchymal stem cell
8
natural killer cell
8
neutrophil
8
pancreatic delta cell
8
pituitary stalk
8
right atrium auricular region
8
skeletal muscle myoblast
8
testis
8
tibial artery
7
A549
7
Ammon's horn
7
amygdala
7
ascending aorta
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
foreskin keratinocyte
7
frontal cortex
7
left cardiac atrium
7
mature neutrophil
7
osteoblast
7
ovary
7
pancreatic alpha cell
7
temporal lobe
6
Chondroid Chordoma
6
Jurkat
anterior cingulate cortex
6
aorta
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
fibroblast of lung
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
neuroblastoma cell line
6
nucleus accumbens
6
pericyte cell
6
retina
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HEK293
5
HUES8
5
IMR-90
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
LNCAP
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary gland epithelial cell
5
mesendoderm
5
osteosarcoma
5
pancreatic stellate cell
5
prostate cancer cell line
5
right lobe of liver
5
sigmoid colon
5
smooth muscle cell of the coronary artery
5
trophoblast cell
4
22Rv1
4
GM06990
4
GM12864
4
GM12865
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM19240
4
HAP-1
4
HCT-116 cell
Life stage
1
embryonic
Date released
3
February, 2021
September, 2022
1
March, 2020
1
May, 2021
Software used
2
macs
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
annotation_type!
accessible chromatin
biosample_term_name!
anterior cingulate cortex
month_released!
September, 2022
organ_slims!
thymus
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP