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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
113
monocyte
85
heart
83
stomach
71
brain
71
kidney
68
lung
66
muscle of arm
64
HeLa-S3
62
small intestine
61
A549
61
adrenal gland
59
placenta
56
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
47
thymus
46
CD8-positive, alpha-beta T cell
45
liver
44
right lung
42
hematopoietic multipotent progenitor cell
41
neural progenitor cell
41
right kidney
40
K562
39
B cell
39
renal cortex interstitium
38
islet of Langerhans
38
renal pelvis
36
left kidney
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
heart left ventricle
31
spleen
30
hepatocyte
29
adipose tissue
28
endothelial cell
25
MCF-7
24
body of pancreas
23
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
adipocyte
22
epithelial cell of proximal tubule
22
macrophage
22
natural killer cell
22
sigmoid colon
22
tibial nerve
22
trophoblast cell
21
foreskin keratinocyte
20
T-helper 1 cell
20
breast cancer cell
20
caudate nucleus
20
mononuclear cell
19
T-helper 17 cell
19
glomerular endothelial cell
19
keratinocyte
19
ovary
19
psoas muscle
18
HFFc6
18
fibroblast
18
foreskin fibroblast
18
subcutaneous adipose tissue
18
substantia nigra
17
coronary artery
17
endothelial cell of umbilical vein
17
heart right ventricle
17
muscle of trunk
17
pancreatic ductal cell
17
retina
17
smooth muscle cell
17
thyroid gland
17
transverse colon
16
chorionic villus
16
fibroblast of lung
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
layer of hippocampus
16
mesenchymal stem cell
16
omental fat pad
16
pancreas
16
right atrium auricular region
16
skeletal muscle tissue
16
testis
15
EndoC_BH1
15
T cell
15
cerebellum
15
neutrophil
15
tibial artery
15
upper lobe of left lung
14
CD4-positive, alpha-beta T cell
14
GM12878
14
H9
14
HepG2
14
T-helper 2 cell
14
ascending aorta
14
cardiac muscle cell
14
endocrine pancreas
14
mammary gland epithelial cell
14
skeletal muscle myoblast
13
aorta
13
fibroblast of cardiac tissue
13
frontal cortex
13
neurosphere
13
prostate gland
13
temporal lobe
12
Peyer's patch
12
bronchial epithelial cell
12
fibroblast of dermis
12
neuroblastoma cell
12
putamen
11
lymphoblastoid cell line
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neuronal stem cell
11
osteoblast
11
pericyte cell
10
22Rv1
10
Ammon's horn
10
embryonic stem cell
10
epithelial cell of prostate
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
9
Rhabdomyosarcoma
9
SK-N-SH
breast epithelium
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
esophagus squamous epithelium
9
left renal pelvis
9
liposarcoma
9
pancreatic beta cell
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal pelvis
9
thoracic aorta
9
trophoblast
9
vagina
8
B-lymphoblastoid cell line
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
endothelial cell of hepatic sinusoid
8
esophagus muscularis mucosa
8
fibroblast cell line
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle satellite cell
8
tongue
7
GM12865
7
HEK293
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
amygdala
7
angular gyrus
7
astrocyte
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
foreskin melanocyte
7
glomerular visceral epithelial cell
7
kidney tubule cell
7
limb
7
mast cell
7
mature neutrophil
7
mesendoderm
7
pancreatic alpha cell
7
right lobe of liver
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
accessible chromatin
biosample_term_name!
breast epithelium
mammary epithelial cell
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP