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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
113
monocyte
64
HeLa-S3
61
A549
54
common myeloid progenitor, CD34-positive
49
H1-hESC
46
CD8-positive, alpha-beta T cell
42
hematopoietic multipotent progenitor cell
40
K562
38
islet of Langerhans
38
liver
36
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
stomach
29
adipose tissue
29
adrenal gland
28
neural progenitor cell
27
spleen
25
MCF-7
25
endothelial cell
25
hepatocyte
24
body of pancreas
23
heart left ventricle
23
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
sigmoid colon
22
tibial nerve
21
foreskin keratinocyte
20
T-helper 1 cell
20
breast cancer cell
20
caudate nucleus
20
kidney
20
mononuclear cell
19
T-helper 17 cell
19
adipocyte
19
glomerular endothelial cell
19
keratinocyte
19
macrophage
19
natural killer cell
19
psoas muscle
18
HFFc6
18
foreskin fibroblast
18
subcutaneous adipose tissue
18
substantia nigra
17
coronary artery
17
endothelial cell of umbilical vein
17
pancreatic ductal cell
17
thyroid gland
17
transverse colon
16
fibroblast of lung
gastrocnemius medialis
16
induced pluripotent stem cell
16
layer of hippocampus
16
omental fat pad
16
pancreas
16
right atrium auricular region
16
skeletal muscle tissue
15
EndoC_BH1
15
GM12878
15
T cell
15
cerebellum
15
fibroblast
15
heart
15
neutrophil
15
ovary
15
tibial artery
15
upper lobe of left lung
14
CD4-positive, alpha-beta T cell
14
HepG2
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
mammary gland epithelial cell
14
skeletal muscle myoblast
14
small intestine
13
frontal cortex
13
heart right ventricle
13
prostate gland
13
temporal lobe
12
Peyer's patch
12
aorta
12
bronchial epithelial cell
12
fibroblast of dermis
12
lung
12
neuroblastoma cell
12
putamen
11
lymphoblastoid cell line
11
mammary epithelial cell
11
mesenchymal stem cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
osteoblast
11
smooth muscle cell
10
22Rv1
10
Ammon's horn
10
embryonic stem cell
10
epithelial cell of prostate
10
gastric cancer cell
10
lymphocyte
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
testis
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
esophagus squamous epithelium
9
fibroblast of cardiac tissue
9
liposarcoma
9
pancreatic beta cell
9
pancreatic delta cell
9
parathyroid adenoma
9
pericyte cell
9
thoracic aorta
9
vagina
8
B-lymphoblastoid cell line
8
brain
8
cardiac muscle cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endothelial cell of hepatic sinusoid
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle satellite cell
8
thymus
7
GM06990
7
GM12864
7
GM12865
7
GM19239
7
H9
7
HT-29
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
amygdala
7
angular gyrus
7
astrocyte
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
foreskin melanocyte
7
glomerular visceral epithelial cell
7
hepatic stellate cell
7
kidney tubule cell
7
mature neutrophil
7
pancreatic alpha cell
7
right lobe of liver
7
stomach smooth muscle
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM08714
6
GM12875
6
GM12892
6
GM19238
6
GM19240
6
HAP-1
6
HCT116
6
KARPAS-422 cell
6
WERI-Rb-1
6
WI38
6
anterior cingulate cortex
6
choroid plexus epithelial cell
6
fibroblast of breast
6
fibroblast of mammary gland
fibroblast of pulmonary artery
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
kidney glomerular epithelial cell
6
mucosa of rectum
6
neuroblastoma cell line
6
nucleus accumbens
6
uterus
5
A673
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
Life stage
embryonic
Date released
2
February, 2021
1
March, 2020
1
May, 2021
Software used
2
macs
1
abc
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
annotation_type!
accessible chromatin
biosample_term_name!
fibroblast of pulmonary artery
gastrocnemius medialis
relevant_life_stage!
embryonic
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP