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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
0
tissue
Biosample term
85
heart
83
stomach
71
brain
71
kidney
68
lung
66
muscle of arm
62
small intestine
61
adrenal gland
59
placenta
56
muscle of leg
55
large intestine
54
muscle of back
52
left lung
47
thymus
45
liver
44
right lung
42
hematopoietic multipotent progenitor cell
41
right kidney
39
renal cortex interstitium
38
islet of Langerhans
38
renal pelvis
36
left kidney
36
neural progenitor cell
32
spleen
31
heart left ventricle
30
adipose tissue
30
spinal cord
24
body of pancreas
22
sigmoid colon
22
tibial nerve
20
caudate nucleus
20
ovary
19
adipocyte
19
psoas muscle
19
subcutaneous adipose tissue
18
coronary artery
18
heart right ventricle
18
substantia nigra
18
thyroid gland
18
transverse colon
17
gastrocnemius medialis
17
muscle of trunk
17
pancreas
17
retina
17
testis
16
chorionic villus
16
layer of hippocampus
16
omental fat pad
16
right atrium auricular region
16
skeletal muscle tissue
16
tibial artery
15
ascending aorta
15
cerebellum
15
endocrine pancreas
15
upper lobe of left lung
14
frontal cortex
14
temporal lobe
13
Peyer's patch
13
aorta
13
prostate gland
13
putamen
11
cardiomyocytes
11
left cardiac atrium
11
left renal cortex interstitium
11
left renal pelvis
11
right renal pelvis
10
Ammon's horn
10
angular gyrus
10
breast epithelium
10
colonic mucosa
10
esophagus
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
lower leg skin
10
mesenchymal stem cell
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
10
vagina
9
chorion membrane
9
cingulate gyrus
9
duodenal mucosa
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
mucosa of rectum
9
parathyroid adenoma
9
progenitor cell of endocrine pancreas
9
right lobe of liver
9
stomach smooth muscle
8
T-cell acute lymphoblastic leukemia
8
cardiomyocytes (cardiac muscle cell)
8
embryonic stem cell
8
endodermal cell
8
eye
8
muscle layer of colon
8
muscle layer of duodenum
8
neuroblastoma cell line
8
right cardiac atrium
8
uterus
7
amygdala
7
gastroesophageal sphincter
7
hypothalamus
7
limb
7
mesendoderm
7
mesodermal cell
7
neuronal stem cell
7
nucleus accumbens
7
urinary bladder
6
Brodmann (1909) area 46
6
anterior cingulate cortex
6
cardiac muscle cell
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
globus pallidus
6
midbrain
6
muscle cell
6
occipital lobe
6
skin of body
6
subcutaneous abdominal adipose tissue
5
C1 segment of cervical spinal cord
5
bipolar neuron
5
cartilage tissue
5
gastrocnemius medialis(Muscle - Skeletal)
5
germinal matrix
5
left ventricle myocardium
5
middle frontal gyrus
5
neural cell
5
smooth muscle cell
5
superior temporal gyrus
5
trophoblast cell
5
umbilical cord
4
amnion
4
bone tissue
4
cerebellar cortex
4
colon adenocarcinoma
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
ectodermal cell
4
femur
4
hepatocyte
4
islet precursor cell
4
medulla oblongata
4
mucosa of stomach
4
neuron
4
pons
4
rectum smooth muscle tissue
4
rhabdomyosarcoma cell
4
visceral abdominal adipose tissue
3
arm bone
3
cardiac mesoderm primordium
3
cortex of kidney
3
dorsolateral prefrontal cortex
3
embryonic facial prominence
3
esophageal adenocarcinoma
3
germinal center
3
hepatocyte(AFP)
3
inferior parietal cortex
3
leg bone
3
olfactory neurosphere cell line
3
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
suprapubic skin
2
muscle of leg
2
B cell
2
BICR 31
2
CD8-Positive T-Lymphocytes
2
EAhy 926 cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T-lymphoma cell line
2
Th1 cell
2
adipose-derived stem cell
2
atypical teratoid rhabdoid tumor
2
blood
2
breast carcinoma
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
chronic myelomonocytic leukemia
2
colorectal adenocarcinoma
2
diffuse intrinsic pontine glioma
2
diffuse large B-cell lymphoma
2
endometrial stromal cell
2
endometrial stromal tumor
2
endometriosis
2
endometrium cancer
2
epidermal stem cell
2
erythroid progenitor cell
2
fallopian tube
2
fibroblast
2
first pancreatic bud
2
foreskin keratinocyte
2
foreskin melanocyte
2
iPS DF 4.7 Cell Line
2
kidney epithelium
2
lymphocyte of B lineage (iPSC)
2
mammary gland
2
mammary gland epithelial cell
2
medulloblastoma cell line
2
middle frontal area 46
2
myocyte
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
accessible chromatin
organ_slims!
tongue
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP