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Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
3
target gene predictions
1
gene expression
1
variant allelic effects
Annotation Category
3
Target gene links
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
4
snATAC-seq
1
RNA-seq
Available data
tsv
4
bed bed3+
2
bigBed narrowPeak
2
bigWig
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
97
monocyte
54
common myeloid progenitor, CD34-positive
43
CD8-positive, alpha-beta T cell
32
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
22
CD8-positive, alpha-beta memory T cell
20
mononuclear cell
19
foreskin keratinocyte
18
endothelial cell of umbilical vein
17
trophoblast cell
16
T cell
16
endothelial cell
16
fibroblast of lung
16
hepatocyte
16
natural killer cell
16
regulatory T cell
15
foreskin fibroblast
15
keratinocyte
15
neutrophil
14
CD4-positive, alpha-beta T cell
14
macrophage
14
skeletal muscle myoblast
13
T-helper 1 cell
13
fibroblast
13
neurosphere
12
T-helper 17 cell
12
T-helper 2 cell
12
fibroblast of dermis
12
mammary epithelial cell
12
mammary gland epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
pericyte cell
11
bronchial epithelial cell
11
smooth muscle cell
10
dermis blood vessel endothelial cell
10
fibroblast of cardiac tissue
10
osteoblast
9
epithelial cell of prostate
9
mature neutrophil
9
naive T cell
8
astrocyte
8
fibroblast of breast
8
kidney tubule cell
8
myoepithelial cell of mammary gland
8
pancreatic ductal cell
8
skeletal muscle satellite cell
7
epithelial cell of proximal tubule
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
retinal pigment epithelial cell
7
skin fibroblast
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
endothelial cell of hepatic sinusoid
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
glomerular endothelial cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
olfactory receptor cell
6
pancreatic delta cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
fibroblast of the aortic adventitia
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
mesenchymal stem cell
5
pancreatic acinar cell
5
pancreatic alpha cell
5
pancreatic beta cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
CD4-positive helper T cell
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
mast cell
4
myofibroblast cell
4
non-pigmented ciliary epithelial cell
4
skeletal muscle fiber
4
stromal cell of bone marrow
4
tracheal epithelial cell
4
type I muscle cell
4
type II muscle cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic adventitial fibroblast
3
basal cell
3
blood cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
mammary stem cell
3
mononuclear cell of bone marrow
3
myotube
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
preadipocyte
3
regular cardiac myocyte
3
renal epithelial cell
3
smooth muscle cell of the coronary artery
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
Adipose stromal cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Ishikawa
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th1 cell
2
Th17 cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipocyte
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
brain pericyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
endothelial cell of coronary artery
2
enteric smooth muscle cell
2
erythroid cell
2
erythroid progenitor cell
2
fat cell
2
gabaergic neuron
2
glutamatergic neuron
2
goblet cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
mantle cell lymphoma cell
2
megakaryocyte
2
memory B cell
2
meso-epithelial cell
2
mesothelial cell
2
microglial cell
2
naive B cell
2
naive t cell
2
neoplastic cell
2
neuronal stem cell
2
pancreatic endocrine cell
2
pancreatic stellate cell
2
parietal cell
2
peptic cell
2
peripheral blood stem cell
2
peripheral blood-derived erythroblast
2
prostate gland cancer cell
2
pulmonary interstitial fibroblast
2
renal proximal tubule cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-cell lymphoma cell
1
B-lymphocyte
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T follicular helper cell
1
T-cell lymphoma cell
1
Th2 cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
Organ
5
epithelium
5
pancreas
Life stage
2
adult
Date released
2
February, 2021
2
January, 2021
1
August, 2018
Software used
3
cicero
1
deltasvm
1
r
Lab
4
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
3
AMP
2
T1D
RFA
3
AMP
2
T1D
annotation_type!
accessible chromatin
files.file_type!
bed gappedPeak
tsv
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR746SVT
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGlow_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR998IGH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGhigh_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR014OEB
released
Annotation file set
: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR884MOQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic alpha cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR110QWS
released
Annotation file set
: pancreatic alpha cell TPM gene expreassion matrix and statistic summary from scRNA-seq publications for non-diabetic adults
Lab:
AMP-T2D consortium
Project:
AMP