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Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
111
monocyte
54
common myeloid progenitor, CD34-positive
45
CD8-positive, alpha-beta T cell
34
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
25
hepatocyte
23
endothelial cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
regulatory T cell
20
T-helper 1 cell
20
mononuclear cell
19
T-helper 17 cell
19
foreskin keratinocyte
19
glomerular endothelial cell
18
endothelial cell of umbilical vein
17
natural killer cell
17
trophoblast cell
16
T cell
16
fibroblast of lung
15
T-helper 2 cell
15
foreskin fibroblast
15
keratinocyte
15
macrophage
15
neutrophil
14
CD4-positive, alpha-beta T cell
14
skeletal muscle myoblast
13
fibroblast
13
neurosphere
12
fibroblast of dermis
12
mammary epithelial cell
12
mammary gland epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
osteoblast
12
pancreatic ductal cell
12
pericyte cell
11
bronchial epithelial cell
11
smooth muscle cell
10
dermis blood vessel endothelial cell
10
endothelial cell of hepatic sinusoid
10
fibroblast of cardiac tissue
9
astrocyte
9
epithelial cell of prostate
9
glomerular visceral epithelial cell
9
mature neutrophil
9
naive T cell
9
pancreatic acinar cell
9
pancreatic delta cell
8
fibroblast of breast
8
kidney tubule cell
8
myoepithelial cell of mammary gland
8
pancreatic alpha cell
8
pancreatic beta cell
8
skeletal muscle satellite cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney loop of Henle thin ascending limb epithelial cell
7
retinal pigment epithelial cell
7
skin fibroblast
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
hepatic stellate cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
kidney interstitial cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
mast cell
5
mesangial cell
5
mesenchymal stem cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
CD4-positive helper T cell
4
adult endothelial progenitor cell
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
memory B cell
4
myofibroblast cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
skeletal muscle fiber
4
stromal cell of bone marrow
4
tracheal epithelial cell
4
type I muscle cell
4
type II muscle cell
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic adventitial fibroblast
3
basal cell
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
Organ
2
epithelium
2
stomach
Date released
1
February, 2024
1
November, 2021
Software used
1
abc
1
deltasvm
Lab
2
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
annotation_type!
accessible chromatin
files.file_type!
bed gappedPeak
month_released!
January, 2021
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR283LYA
released
Annotation file set
: Target gene predictions of Parietal Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR855UCF
released
Annotation file set
: Variant allelic effects annotation of Parietal cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP