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Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
1
binding sites
1
gene expression
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
scRNA-seq
Available data
3
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
112
monocyte
54
common myeloid progenitor, CD34-positive
45
CD8-positive, alpha-beta T cell
34
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
25
hepatocyte
23
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
21
endothelial cell
20
T-helper 1 cell
20
mononuclear cell
19
foreskin keratinocyte
18
T-helper 17 cell
17
natural killer cell
17
trophoblast cell
16
T cell
16
fibroblast of lung
15
T-helper 2 cell
15
foreskin fibroblast
15
keratinocyte
15
macrophage
15
neutrophil
14
CD4-positive, alpha-beta T cell
14
skeletal muscle myoblast
13
fibroblast
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
pancreatic ductal cell
12
fibroblast of dermis
12
mammary epithelial cell
12
mammary gland epithelial cell
12
osteoblast
12
pericyte cell
11
bronchial epithelial cell
11
pancreatic delta cell
11
smooth muscle cell
10
fibroblast of cardiac tissue
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
9
astrocyte
9
epithelial cell of prostate
9
mature neutrophil
9
naive T cell
8
fibroblast of breast
8
kidney tubule cell
8
myoepithelial cell of mammary gland
8
skeletal muscle satellite cell
7
epithelial cell of proximal tubule
7
fibroblast of mammary gland
7
fibroblast of villous mesenchyme
7
retinal pigment epithelial cell
7
skin fibroblast
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
cardiac muscle cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
hepatic stellate cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
renal cortical epithelial cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
luminal epithelial cell of mammary gland
5
mast cell
5
memory B cell
5
mesenchymal stem cell
5
skeletal muscle cell
4
CD4-positive helper T cell
4
astrocyte of the spinal cord
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
inflammatory macrophage
4
iris pigment epithelial cell
4
myofibroblast cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
plasma cell
4
skeletal muscle fiber
4
stromal cell of bone marrow
4
tracheal epithelial cell
4
type I muscle cell
4
type II muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic adventitial fibroblast
3
basal cell
3
blood cell
3
cardiac fibroblast
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
kidney interstitial cell
3
mammary stem cell
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive B cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
pre-B acute lymphoblastic leukemia cell
3
preadipocyte
3
regular cardiac myocyte
3
renal epithelial cell
3
type B pancreatic cell
3
type II pneumocyte
2
Adipose stromal cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Ishikawa
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th1 cell
2
Th17 cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipocyte
2
articular chondrocyte
2
blood vessel smooth muscle cell
2
brain pericyte
2
cardiac muscle myoblast
Life stage
1
adult
Date released
3
February, 2021
1
November, 2021
Software used
2
macs
1
abc
1
r
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
annotation_type!
accessible chromatin
files.file_type!
txt
organ_slims!
vasculature
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR097VJH
released
Annotation file set
: Target gene predictions of Plasma Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR999LXJ
released
Annotation file set
: Histone modifications annotation for Blood Plasma_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR063KUW
released
Annotation file set
: Binding sites annotation for Blood Plasma_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR611QBM
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Plasma Cells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP