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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
2
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
5
tsv
4
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
92
monocyte
62
stomach
61
HeLa-S3
61
heart
50
brain
50
lung
50
muscle of arm
48
kidney
46
small intestine
45
adrenal gland
44
H1-hESC
44
placenta
43
A549
42
CD8-positive, alpha-beta T cell
42
large intestine
41
common myeloid progenitor, CD34-positive
41
muscle of back
41
muscle of leg
39
left lung
36
thymus
34
K562
33
right lung
31
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
30
right kidney
29
B cell
29
neural progenitor cell
29
renal pelvis
28
liver
27
CD14-positive monocyte
27
left kidney
25
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
spleen
20
MCF-7
20
breast cancer cell
20
heart left ventricle
19
HFFc6
18
adipocyte
18
adipose tissue
18
endothelial cell
17
fibroblast
17
foreskin keratinocyte
17
keratinocyte
16
foreskin fibroblast
16
natural killer cell
16
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
hepatocyte
14
GM12878
14
HepG2
14
mononuclear cell
14
ovary
14
psoas muscle
14
smooth muscle cell
13
body of pancreas
13
cardiac muscle cell
13
transverse colon
12
endothelial cell of umbilical vein
12
fibroblast of lung
12
gastrocnemius medialis
12
heart right ventricle
12
layer of hippocampus
12
macrophage
12
muscle of trunk
12
neuroblastoma cell
12
pancreas
12
thyroid gland
12
upper lobe of left lung
11
CD4-positive, alpha-beta T cell
11
chorionic villus
11
mammary epithelial cell
11
mesenchymal stem cell
11
neuronal stem cell
11
retina
11
testis
11
tibial nerve
10
T cell
10
bronchial epithelial cell
10
endocrine pancreas
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
islet of Langerhans
10
mammary gland epithelial cell
10
pericyte cell
10
regulatory T cell
10
skeletal muscle tissue
9
Peyer's patch
9
Rhabdomyosarcoma
9
caudate nucleus
9
coronary artery
9
diffuse intrinsic pontine glioma
9
fibroblast of dermis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
osteoblast
9
prostate gland
9
skeletal muscle myoblast
8
22Rv1
8
B-lymphoblastoid cell line
8
breast epithelium
8
epithelial cell of prostate
8
fibroblast cell line
8
pituitary stalk
8
right renal pelvis
8
temporal lobe
7
HEK293
7
IMR-90
7
T-helper 1 cell
7
aorta
7
colonic mucosa
7
esophageal adenocarcinoma
7
left cardiac atrium
7
left renal cortex interstitium
7
left renal pelvis
7
lower leg skin
7
neutrophil
7
substantia nigra
7
trophoblast
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM12875
6
GM19238
6
GM19239
6
GM19240
6
HAP-1
6
HL-60
6
HT-29
6
Jurkat
6
SK-N-MC
6
astrocyte
6
cingulate gyrus
6
endometrium adenocarcinoma
6
esophagus
6
esophagus squamous epithelium
6
eye
6
hESC cell
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
omental fat pad
6
parathyroid adenoma
6
thoracic aorta
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
Caco-2 cell
5
CyT49
5
Ewing sarcoma
5
GM08714
5
GM12891
5
GM12892
5
GM23248
5
HCT116
5
HUES8
5
KARPAS-422 cell
5
LHCN-M2
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
MG63
5
MM.1S
5
NAMALWA cell
5
OCI-LY1
5
OCI-LY7
5
SK-N-DZ
5
SK-N-SH
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
ascending aorta
5
dermis blood vessel endothelial cell
5
endodermal cell
5
esophagus muscularis mucosa
5
foreskin melanocyte
5
mast cell
5
mesendoderm
5
mucosa of rectum
5
myoepithelial cell of mammary gland
5
osteosarcoma
5
pancreatic ductal cell
5
prostate cancer cell line
5
right atrium auricular region
5
right renal cortex interstitium
5
skin fibroblast
5
tibial artery
5
tongue
4
A673
Organ
4
brain
Life stage
3
adult
Date released
2
February, 2021
2
September, 2022
Software used
2
r
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
accessible chromatin
Showing 4 of 4 results
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Download
FileSet
DSR916RPZ
released
Annotation file set
: Candidate regulatory elements for BSS01469 putamen from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR506XLL
released
Annotation file set
: Target gene predictions for BSS01469 putamen from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR370LED
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE putamen
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510FWG
released
Annotation file set
: Histone modifications annotation for Neural Putamen from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP