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Schema
Citing CMDGA
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Annotation type
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
109
monocyte
40
common myeloid progenitor, CD34-positive
39
CD8-positive, alpha-beta T cell
32
B cell
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
21
CD8-positive, alpha-beta memory T cell
21
hepatocyte
20
endothelial cell
19
macrophage
19
regulatory T cell
18
mononuclear cell
17
T-helper 1 cell
17
T-helper 17 cell
16
T cell
16
fibroblast
16
natural killer cell
14
pericyte cell
13
T-helper 2 cell
13
endothelial cell of umbilical vein
13
fibroblast of lung
13
neutrophil
13
smooth muscle cell
13
trophoblast cell
12
foreskin keratinocyte
11
fibroblast of dermis
11
keratinocyte
11
mammary gland epithelial cell
11
pancreatic delta cell
10
endothelial cell of hepatic sinusoid
10
fibroblast of cardiac tissue
10
pancreatic acinar cell
10
pancreatic ductal cell
10
skeletal muscle myoblast
9
naive T cell
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neurosphere
9
pancreatic beta cell
8
pancreatic alpha cell
7
astrocyte
7
epithelial cell of prostate
7
epithelial cell of proximal tubule
7
kidney tubule cell
7
mature neutrophil
7
skeletal muscle satellite cell
7
skin fibroblast
6
CD4-positive, alpha-beta T cell
6
alternatively activated macrophage
6
bronchial epithelial cell
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
erythroblast
6
fibroblast of breast
6
foreskin fibroblast
6
glomerular endothelial cell
6
mast cell
6
myoepithelial cell of mammary gland
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
osteoblast
6
pancreatic stellate cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
choroid plexus epithelial cell
5
epithelial cell of esophagus
5
hepatic stellate cell
5
inflammatory macrophage
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
luminal epithelial cell of mammary gland
5
memory B cell
5
renal cortical epithelial cell
4
CD4-positive helper T cell
4
adipocyte
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac muscle cell
4
endothelial cell of lymphatic vessel
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of the aortic adventitia
4
fibroblast of villous mesenchyme
4
glomerular visceral epithelial cell
4
kidney capillary endothelial cell
4
mesenchymal stem cell
4
myofibroblast cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
retinal pigment epithelial cell
4
skeletal muscle cell
4
skeletal muscle fiber
4
smooth muscle cell of the brain vasculature
4
type I muscle cell
4
type II muscle cell
3
CD1c-positive myeloid dendritic cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
astrocyte of the spinal cord
3
basal cell
3
blood cell
3
brain microvascular endothelial cell
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
endocardial cell
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
fibroblast of gingiva
3
fibroblast of peridontal ligament
3
fibroblast of the conjunctiva
3
foreskin melanocyte
3
iris pigment epithelial cell
3
lung microvascular endothelial cell
3
mammary epithelial cell
3
mammary stem cell
3
naive B cel
3
naive B cell
3
non-pigmented ciliary epithelial cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
pulmonary artery endothelial cell
3
regular cardiac myocyte
3
smooth muscle cell of the coronary artery
3
stromal cell of bone marrow
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
T-cell
2
activated CD8-positive, alpha-beta T cell
2
articular chondrocyte
2
blood vessel smooth muscle cell
2
dendritic cell
2
effector CD4-positive, alpha-beta T cell
Organ
5
epithelium
5
kidney
Life stage
3
unknown
1
adult
Date released
3
September, 2022
1
February, 2020
February, 2021
1
May, 2020
Software used
3
r
1
chromhmm
1
deltasvm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
accessible chromatin
files.file_type!
bed gappedPeak
month_released!
February, 2021
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR879POD
released
Annotation file set
: Candidate regulatory elements for BSS01491 renal cortical epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR916TGP
released
Annotation file set
: Target gene predictions for BSS01491 renal cortical epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339OXR
released
Annotation file set
: Chromatin states for BSS01491 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR824CPF
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney renal cortical epithelial cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR564RKB
released
Annotation file set
: Gene expression levels of Kidney renal cortical epithelial cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP