Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
accessible chromatin
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
71
brain
66
muscle of arm
56
muscle of leg
54
muscle of back
20
caudate nucleus
19
psoas muscle
18
substantia nigra
17
gastrocnemius medialis
17
muscle of trunk
16
layer of hippocampus
16
skeletal muscle tissue
15
cerebellum
14
frontal cortex
14
temporal lobe
13
putamen
10
Ammon's horn
10
SK-N-SH
10
angular gyrus
10
esophagus muscularis mucosa
10
pituitary stalk
9
SK-N-DZ
9
cingulate gyrus
9
stomach smooth muscle
8
choroid plexus epithelial cell
8
skeletal muscle satellite cell
7
SK-N-MC
7
amygdala
7
gastroesophageal sphincter
7
hypothalamus
7
nucleus accumbens
6
BE(2)-C
6
Brodmann (1909) area 46
6
LHCN-M2
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
globus pallidus
6
midbrain
5
A673
5
Daoy
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
middle frontal gyrus
5
myotube
5
skeletal muscle cell
4
A172
4
H54
4
M059J
4
SJCRH30
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
medulla oblongata
4
medulloblastoma
4
pons
4
rectum smooth muscle tissue
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
3
U-87 MG
3
dorsolateral prefrontal cortex
3
inferior parietal cortex
2
cardiac fibroblast
2
muscle of leg
2
brain pericyte
2
cardiac muscle myoblast
2
middle frontal area 46
2
pituitary gland
2
prefrontal cortex
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
hindlimb muscle
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
forelimb muscle
1
frontal pole
1
hindlimb muscle
1
hippocampal neuron
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
septal nuclear complex
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
5
musculature of body
0
brain
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
May, 2020
Software used
2
r
1
chromhmm
1
deltasvm
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
accessible chromatin
organ_slims!
blood vessel
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR404VRF
released
Annotation file set
: Candidate regulatory elements for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722IWA
released
Annotation file set
: Target gene predictions for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR253DCD
released
Annotation file set
: Chromatin states for BSS01572 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR101OOW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR592EHG
released
Annotation file set
: Genetic variants with deltaSVM predictions in skeletal muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP