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Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
2
gene expression
2
variant allelic effects
Annotation Category
2
Gene expression levels
2
Genetic variant effects
Annotation type Category
2
snATAC-seq
2
snRNA-seq
Available data
2
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
66
muscle of arm
56
muscle of leg
54
muscle of back
19
psoas muscle
17
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
10
esophagus muscularis mucosa
9
stomach smooth muscle
8
skeletal muscle satellite cell
7
gastroesophageal sphincter
6
LHCN-M2
5
A673
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
5
skeletal muscle cell
4
SJCRH30
4
rectum smooth muscle tissue
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
2
muscle of leg
2
cardiac muscle myoblast
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
hindlimb muscle
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
forelimb muscle
1
hindlimb muscle
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
4
musculature of body
Date released
4
February, 2024
Software used
2
deeptools
2
deltasvm
2
r
2
samtools
2
umitools
Lab
2
Bing Ren, UCSD
2
Stephen Parker, UMich
Project
4
AMP
RFA
2
AMP
2
AMP2
annotation_type!
accessible chromatin
month_released!
February, 2023
organ_slims!
pericardium
Showing 4 of 4 results
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Download
FileSet
DSR040MIE
released
Annotation file set
: Cell type gene expression mean TPM and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR985XYU
released
Annotation file set
: Cell type gene expression mean TPM and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR776HHT
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR640ZDY
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP