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Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
1
caQTL
1
eQTL
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Target gene links
Annotation type Category
1
ATAC-seq
1
RNA-seq
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
66
muscle of arm
56
muscle of leg
54
muscle of back
19
psoas muscle
17
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
10
esophagus muscularis mucosa
9
stomach smooth muscle
7
gastroesophageal sphincter
7
skeletal muscle satellite cell
6
LHCN-M2
5
A673
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
5
skeletal muscle cell
4
SJCRH30
4
rectum smooth muscle tissue
3
type I muscle cell
3
type II muscle cell
2
muscle of leg
2
cardiac muscle myoblast
2
respiratory system smooth muscle
2
skeletal muscle
2
skeletal muscle fiber
2
somatic muscle myotube
1
hindlimb muscle
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
forelimb muscle
1
hindlimb muscle
1
rectal smooth muscle tissue
smooth muscle tissue
Organ
3
musculature of body
Date released
1
February, 2024
1
November, 2021
1
October, 2022
Software used
1
abc
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
umitools
Lab
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP2
1
ENCODE3
annotation_type!
accessible chromatin
biosample_term_name!
smooth muscle tissue
software_used.software.name!
umitools
Showing 3 of 3 results
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Download
FileSet
DSR232VYZ
released
Annotation file set
: Target gene predictions of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP