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Schema
Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
112
monocyte
55
HeLa-S3
50
H1-hESC
45
CD8-positive, alpha-beta T cell
37
islet of Langerhans
29
neural progenitor cell
28
kidney
26
stomach
25
endothelial cell
25
heart
23
liver
22
K562
22
brain
22
hepatocyte
20
breast cancer cell
20
lung
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
18
epithelial cell of proximal tubule
18
macrophage
17
muscle of arm
17
muscle of leg
17
pancreatic ductal cell
17
placenta
17
small intestine
17
subcutaneous adipose tissue
16
induced pluripotent stem cell
16
large intestine
15
common myeloid progenitor, CD34-positive
15
fibroblast
15
glomerular endothelial cell
15
muscle of back
14
EndoC_BH1
13
H9
13
adipocyte
13
heart left ventricle
13
keratinocyte
13
left lung
12
CD4-positive, alpha-beta T cell
12
GM12878
12
hematopoietic multipotent progenitor cell
12
neuroblastoma cell
12
regulatory T cell
12
smooth muscle cell
12
spleen
12
substantia nigra
11
B cell
11
T-helper 1 cell
11
lymphoblastoid cell line
11
mammary epithelial cell
11
spinal cord
10
MCF-7
10
adipose tissue
10
body of pancreas
10
cardiac muscle cell
10
embryonic stem cell
10
endothelial cell of umbilical vein
10
foreskin fibroblast
10
gastric cancer cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
omental fat pad
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
renal cortex interstitium
10
right lung
9
Rhabdomyosarcoma
9
cardiomyocytes
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
neuronal stem cell
9
pancreas
9
pancreatic beta cell
9
renal pelvis
9
tibial nerve
8
B-lymphoblastoid cell line
8
HepG2
8
T-helper 17 cell
8
coronary artery
8
endothelial cell of hepatic sinusoid
8
fibroblast cell line
8
heart right ventricle
8
mesenchymal stem cell
8
natural killer cell
8
pancreatic delta cell
8
pituitary stalk
8
putamen
8
right kidney
8
testis
7
A549
7
Ammon's horn
7
amygdala
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
foreskin keratinocyte
7
mature neutrophil
7
osteoblast
7
ovary
7
pancreatic alpha cell
7
skeletal muscle myoblast
7
temporal lobe
6
Chondroid Chordoma
6
Jurkat
6
anterior cingulate cortex
6
aorta
6
bronchial epithelial cell
6
cardiomyocytes (cardiac muscle cell)
6
fibroblast of lung
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
neuroblastoma cell line
6
neutrophil
6
nucleus accumbens
6
pericyte cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HEK293
5
HUES8
5
IMR-90
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
LNCAP
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Podocyte
5
ascending aorta
5
cardiac precursors (cardiac muscle cell)
5
frontal cortex
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
left cardiac atrium
5
mammary gland epithelial cell
5
mesendoderm
5
osteosarcoma
5
pancreatic stellate cell
5
prostate cancer cell line
5
right lobe of liver
5
sigmoid colon
5
smooth muscle cell of the coronary artery
5
trophoblast cell
4
22Rv1
4
GM06990
4
GM12864
4
GM12865
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM19240
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
accessible chromatin
month_released!
May, 2020
September, 2022
organ_slims!
thymus
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP