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Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
1
accessible chromatin
binding sites
1
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
2
Gene expression levels
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
ATAC-seq
2
RNA-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
4
bed bed3+
1
bigWig
1
tsv
File set status
6
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
3
cell line
3
primary cell
Biosample term
67
muscle of arm
58
muscle of leg
23
tibial nerve
19
coronary artery
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
17
tibial artery
15
ascending aorta
13
aorta
11
thoracic aorta
10
dermis blood vessel endothelial cell
10
endothelial cell of hepatic sinusoid
10
lower leg skin
8
choroid plexus epithelial cell
8
limb
7
dermis lymphatic vessel endothelial cell
6
GM23248
6
fibroblast of pulmonary artery
6
pulmonary artery endothelial cell
6
smooth muscle cell of the brain vasculature
6
smooth muscle cell of the coronary artery
5
cardiac fibroblast
5
Afferent / Efferent Arteriole Endothelial Cell
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Glomerular Capillary Endothelial Cell
5
Lymphatic Endothelial Cell
5
Peritubular Capillary Endothelial Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
brain microvascular endothelial cell
5
fibroblast of the aortic adventitia
5
kidney capillary endothelial cell
5
lung microvascular endothelial cell
4
endothelial cell of lymphatic vessel
4
femur
4
gastrocnemius medialis(Muscle - Skeletal)
4
pancreatic endothelial cell
4
vascular associated smooth muscle cell
3
aortic endothelial cell
3
arm bone
3
dermis microvascular lymphatic vessel endothelial cell
3
leg bone
2
hindlimb muscle
2
muscle of leg
2
capillary endothelial cell
2
forelimb muscle
1
brain microvascular endothelial cell
1
aorta wall
1
circle of Willis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell of coronary artery
1
fibroblast of arm
1
hindlimb muscle
1
placental villus capillary endothelial cell
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
skin - sun exposed (lower leg)
1
skin of forearm
1
vein endothelial cell
1
whole blood
Organ
6
artery
6
blood vessel
6
heart
6
vasculature
0
limb
Life stage
2
adult
1
unknown
Date released
3
February, 2021
1
February, 2020
1
February, 2023
1
May, 2021
Software used
2
macs
2
r
1
abc
1
rasqual
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
binding sites
eQTL
Showing 6 of 6 results
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Download
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR938TKW
released
Annotation file set
: Gene expression annotation of smooth muscle cell of the coronary artery for GSE113348
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR951OND
released
Annotation file set
: Histone modifications annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR277QFW
released
Annotation file set
: Gene expression levels of Coronary artery smooth muscle cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP