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Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
9
ChIP-seq
DNase-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
0
in vitro differentiated cells
Biosample term
41
islet of Langerhans
37
neural progenitor cell
33
kidney
27
heart
27
retina
26
liver
24
brain
22
stomach
20
pigmented layer of retina
19
lung
19
subcutaneous adipose tissue
17
adipose tissue
17
adrenal gland
17
placenta
17
small intestine
16
muscle of arm
15
heart left ventricle
15
muscle of leg
14
large intestine
14
thymus
13
coronary artery
13
embryonic stem cell
13
left lung
13
muscle of back
13
tibial nerve
12
hematopoietic multipotent progenitor cell
11
adipocyte
11
cardiomyocytes
11
caudate nucleus
11
right atrium auricular region
11
right lung
11
substantia nigra
11
tibial artery
10
body of pancreas
10
cerebellum
10
omental fat pad
10
right kidney
10
spleen
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
induced pluripotent stem cell
9
left kidney
9
progenitor cell of endocrine pancreas
9
putamen
9
renal cortex interstitium
9
renal pelvis
8
ascending aorta
8
cardiomyocytes (cardiac muscle cell)
8
heart right ventricle
8
pancreas
8
spinal cord
7
Ammon's horn
7
amygdala
7
aorta
7
hypothalamus
7
left cardiac atrium
7
nucleus accumbens
7
ovary
7
psoas muscle
7
skeletal muscle tissue
7
temporal lobe
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
layer of hippocampus
6
neuroblastoma cell line
6
retinal pigment epithelial cell
6
right lobe of liver
6
sigmoid colon
6
testis
5
C1 segment of cervical spinal cord
5
SGBS preadipocytes
5
T-cell acute lymphoblastic leukemia
5
cartilage tissue
5
cerebellum (Hemisphere)
5
chondrocyte
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
pancreatic ductal cell
5
prostate gland
5
right cardiac atrium
5
thoracic aorta
5
thyroid gland
5
transverse colon
4
angular gyrus
4
bone tissue
4
chorionic villus
4
colonic mucosa
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
esophagus
4
gastrocnemius medialis
4
muscle of trunk
4
rhabdomyosarcoma cell
4
skin of body
4
upper lobe of left lung
4
vagina
4
visceral abdominal adipose tissue
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
Peyer's patch
3
adipose-derived stem cell
3
chorion membrane
3
cingulate gyrus
3
dorsolateral prefrontal cortex
3
duodenal mucosa
3
esophagus muscularis mucosa
3
hepatocyte(AFP)
3
mesenchymal stem cell
3
mucosa of rectum
3
occipital lobe
3
pancreatic ductal adenocarcinoma
3
stomach smooth muscle
3
trophoblast
3
uterus
2
B cell
2
Brodmann (1909) area 46
2
blood
2
breast epithelium
2
cardiac muscle cell
2
colon adenocarcinoma
2
cortex of kidney
2
differentiating adipose-derived stem cell
2
endodermal cell
2
endometriosis
2
endothelial cell
2
esophageal adenocarcinoma
2
esophagus squamous epithelium
2
excitatory neuron
2
eye
2
germinal matrix
2
globus pallidus
2
hippocampal neuron
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lower motor neuron
2
lymphocyte of B lineage (iPSC)
2
medulloblastoma cell line
2
mesendoderm
2
mesodermal cell
2
midbrain
2
minor salivary gland
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
neuronal stem cell
2
pancreatic stellate cell
2
parathyroid adenoma
2
pituitary gland
2
rectum smooth muscle tissue
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle
2
smooth muscle cell
2
superior temporal gyrus
2
tissue
2
tongue
2
umbilical cord
2
urinary bladder
1
Adipose SGBS cell line (adipocyte)
1
BICR 31
1
Barrett's epithelial cell line
1
Brodmann (1909) area 9
1
CD4-positive helper T cell
1
CD8-Positive T-Lymphocytes
1
Chondroid Chordoma
1
Crypt of Lieberkuhn
1
EAhy 926 cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
T-lymphoma cell line
1
Th1 cell
1
Uveal Melanoma
1
abdominal aorta artery
1
amnion
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
arm bone
1
atypical teratoid rhabdoid tumor
1
bed nucleus of stria terminalis
1
bipolar neuron
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
breast carcinoma
1
cardiac fibroblast
1
cardiac mesoderm primordium
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
cardiogenic mesoderm
1
cerebellar cortex
Organ
3
musculature of body
3
stomach
Life stage
2
adult
Date released
2
September, 2022
1
August, 2017
Software used
3
chromhmm
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
annotation_type!
binding sites
annotation_type_category!
DNase-seq
Showing 3 of 3 results
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Download
FileSet
DSR842KSL
released
Annotation file set
: Chromatin states for BSS01660 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR289BEC
released
Annotation file set
: Chromatin states for BSS01659 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR469602
released
Annotation file set
: ChromHMM 13-state model for stomach smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP