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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
114
monocyte
86
heart
85
stomach
73
kidney
71
brain
67
muscle of arm
66
lung
63
HeLa-S3
62
small intestine
60
A549
60
adrenal gland
59
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
47
CD8-positive, alpha-beta T cell
45
liver
45
right lung
45
thymus
44
H1-hESC
42
right kidney
41
B cell
41
hematopoietic multipotent progenitor cell
40
renal cortex interstitium
40
renal pelvis
39
K562
39
neural progenitor cell
37
retina
36
left kidney
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
31
CD14-positive monocyte
31
islet of Langerhans
31
spleen
30
endothelial cell
30
fibroblast
28
macrophage
27
adipose tissue
27
hepatocyte
24
adipocyte
24
smooth muscle cell
23
MCF-7
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
pericyte cell
22
sigmoid colon
21
foreskin keratinocyte
21
natural killer cell
20
pigmented layer of retina
20
regulatory T cell
19
HFFc6
19
mononuclear cell
19
pancreas
19
psoas muscle
19
tibial nerve
18
body of pancreas
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
ovary
18
thyroid gland
18
transverse colon
17
heart right ventricle
17
muscle of trunk
16
H9
16
caudate nucleus
16
chorionic villus
16
keratinocyte
16
mesenchymal stem cell
15
T-helper 1 cell
15
astrocyte
15
coronary artery
15
fibroblast of cardiac tissue
15
foreskin fibroblast
15
layer of hippocampus
15
pancreatic ductal cell
15
skeletal muscle tissue
15
testis
14
GM12878
14
T-helper 17 cell
14
T-helper 2 cell
14
cardiac muscle cell
14
endocrine pancreas
14
neutrophil
14
upper lobe of left lung
13
CD4-positive, alpha-beta T cell
13
EndoC_BH1
13
HepG2
13
Peyer's patch
13
fibroblast of lung
13
mammary gland epithelial cell
13
neurosphere
13
pancreatic beta cell
13
retinal pigment epithelial cell
13
right atrium auricular region
13
skeletal muscle myoblast
13
skeletal muscle satellite cell
13
tibial artery
12
embryonic stem cell
12
excitatory neuron
12
left renal cortex interstitium
12
pancreatic acinar cell
11
aorta
11
breast cancer cell
11
breast epithelium
11
fibroblast of dermis
11
left renal pelvis
11
osteoblast
11
pancreatic alpha cell
11
pancreatic delta cell
11
prostate gland
11
right renal pelvis
11
substantia nigra
11
temporal lobe
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
kidney tubule cell
10
left cardiac atrium
10
lymphoblastoid cell line
10
lymphocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
right renal cortex interstitium
10
subcutaneous adipose tissue
10
thoracic aorta
9
22Rv1
9
SK-N-DZ
9
colonic mucosa
9
omental fat pad
9
parathyroid adenoma
9
putamen
9
skin fibroblast
9
tongue
8
Rhabdomyosarcoma
8
ascending aorta
8
cerebellum
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
erythroblast
8
frontal cortex
8
gastric cancer cell
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
vagina
7
CD4-positive helper T cell
7
HAP-1
7
HEK293
7
HT-29
7
IMR-90
7
KARPAS-422 cell
7
LNCaP clone FGC
7
MM.1S
7
NAMALWA cell
7
SK-N-SH
7
T47D
7
angular gyrus
7
chorion membrane
7
endodermal cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
eye
7
glomerular endothelial cell
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
neuroblastoma cell
7
renal cortical epithelial cell
7
stomach smooth muscle
7
trophoblast
7
uterus
6
Ammon's horn
6
B-lymphoblastoid cell line
6
Brodmann (1909) area 46
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM18507
6
GM19240
6
GM23248
6
H7-hESC
6
HCT116
6
HL-60
6
WI38
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
binding sites
annotation_type_category!
pCHi-C
biosample_term_name!
CD1c-positive myeloid dendritic cell
files.file_type!
tsv
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP