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Getting started
Schema
Clear Filters
Annotation type
2638
pQTL
1709
candidate regulatory elements
1357
target gene predictions
977
histone modifications
944
chromatin state
923
accessible chromatin
binding sites
683
gene expression
480
differential activity
180
eQTL
141
variant allelic effects
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
4554
cis-regulatory elements
3078
Genetic variant effects
1357
Target gene links
1163
Gene expression levels
2
Others
Annotation type Category
4431
ChIP-seq
3064
DNase-seq
2638
quantitative proteomics
546
RNA-seq
515
ATAC-seq
458
snATAC-seq
305
single cell RNA-seq
189
HiC
146
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
24
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
5265
bed bed3+
3550
tsv
869
bed bed9
545
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
10152
released
1
archived
1
revoked
Genome assembly (visualization)
6183
hg19
1915
GRCh38
3
hg18
Organism
10106
Homo sapiens
Biosample type
5251
tissue
2756
primary cell
1709
cell line
432
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
134
monocyte
91
heart
86
stomach
80
kidney
72
brain
70
endothelial cell
68
lung
67
muscle of arm
63
HeLa-S3
63
small intestine
62
adrenal gland
60
A549
60
B cell
59
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
macrophage
54
muscle of back
52
H1-hESC
52
left lung
51
CD8-positive, alpha-beta T cell
47
liver
47
neural progenitor cell
47
smooth muscle cell
47
thymus
45
T cell
45
right lung
44
adipocyte
44
natural killer cell
43
fibroblast
43
islet of Langerhans
42
hematopoietic multipotent progenitor cell
42
right kidney
41
hepatocyte
40
renal cortex interstitium
40
renal pelvis
39
K562
39
retina
36
left kidney
34
heart left ventricle
33
spinal cord
33
spleen
32
CD4-positive, alpha-beta memory T cell
32
cardiac muscle cell
31
CD14-positive monocyte
30
adipose tissue
29
pancreatic ductal cell
27
regulatory T cell
25
tibial nerve
24
body of pancreas
24
epithelial cell of proximal tubule
24
pericyte cell
23
MCF-7
23
T-helper 1 cell
23
neuron
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
caudate nucleus
22
dendritic cell
21
T-helper 17 cell
21
foreskin keratinocyte
21
glomerular endothelial cell
21
pancreas
20
coronary artery
20
ovary
20
pigmented layer of retina
20
psoas muscle
20
subcutaneous adipose tissue
19
astrocyte
19
endothelial cell of lymphatic vessel
19
heart right ventricle
19
mononuclear cell
19
right atrium auricular region
18
HFFc6
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
mesenchymal stem cell
18
pancreatic beta cell
18
pericyte
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
T-helper 2 cell
17
mast cell
17
muscle of trunk
17
omental fat pad
17
pancreatic acinar cell
17
pancreatic alpha cell
16
chorionic villus
16
induced pluripotent stem cell
16
keratinocyte
16
skeletal muscle satellite cell
16
skeletal muscle tissue
16
testis
15
CD4-positive, alpha-beta T cell
15
ascending aorta
15
cerebellum
15
endocardial cell
15
fibroblast of cardiac tissue
15
foreskin fibroblast
15
frontal cortex
15
hepatic stellate cell
15
layer of hippocampus
15
neutrophil
15
pancreatic delta cell
14
H9
14
embryonic stem cell
14
endocrine pancreas
14
osteoblast
14
putamen
14
upper lobe of left lung
13
GM12878
13
HepG2
13
Peyer's patch
13
aorta
13
excitatory neuron
13
fibroblast of lung
13
mammary gland epithelial cell
13
neurosphere
13
retinal pigment epithelial cell
13
skeletal muscle myoblast
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
breast cancer cell
11
breast epithelium
11
fibroblast of dermis
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
prostate gland
11
right renal pelvis
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
kidney tubule cell
10
lymphoblastoid cell line
10
lymphocyte
10
pancreatic stellate cell
10
right renal cortex interstitium
10
thoracic aorta
10
type B pancreatic cell
9
22Rv1
9
SK-N-DZ
9
cardiomyocytes
9
colonic mucosa
9
endothelial cell of hepatic sinusoid
9
esophagus
9
pancreatic A cell
9
parathyroid adenoma
9
progenitor cell of endocrine pancreas
9
skin fibroblast
9
tongue
9
trophoblast
9
vagina
8
Rhabdomyosarcoma
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
erythroblast
8
gastric cancer cell
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
neuronal stem cell
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
NAMALWA cell
7
SK-N-SH
7
T47D
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
endodermal cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
kidney glomerular epithelial cell
leukocyte
7
memory B cell
7
mesendoderm
7
neural cell
7
neuroblastoma cell
7
renal cortical epithelial cell
Organ
2884
vasculature
2832
blood vessel
2807
bodily fluid
2797
blood
2655
vein
918
epithelium
660
kidney
490
connective tissue
468
brain
379
musculature of body
366
heart
302
lung
296
pancreas
283
intestine
242
limb
202
embryo
186
skin of body
174
liver
168
large intestine
143
extraembryonic component
136
adipose tissue
119
stomach
103
eye
84
small intestine
81
bone element
79
uterus
77
artery
75
mammary gland
73
adrenal gland
70
placenta
70
prostate gland
64
ureter
59
__MARKER__
57
penis
50
lymph node
48
thymus
47
gonad
45
esophagus
41
spinal cord
33
spleen
25
nerve
24
lymphoid tissue
23
ovary
23
testis
23
thyroid gland
22
lymphatic vessel
19
mouth
18
skeleton
14
bronchus
13
breast
13
pituitary gland
11
bone marrow
10
tongue
10
urinary bladder
10
vagina
4
nose
3
trachea
1
pericardium
Life stage
5064
adult
1386
embryonic
467
unknown
115
child
75
newborn
64
fetal
32
young adult
30
postnatal
Date released
2636
February, 2025
2511
September, 2022
1871
February, 2021
389
May, 2021
365
February, 2024
333
November, 2021
316
May, 2026
289
June, 2020
286
September, 2023
155
May, 2020
127
August, 2021
127
March, 2020
106
January, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
48
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
10
October, 2022
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2384
r
1832
macs
944
chromhmm
838
encode-ccres
250
abc
139
qTLtools
136
deltasvm
117
deseq2
36
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
17
samtools
15
limix
14
hiccups
14
matrix-eQTL
11
deeptools
11
rasqual
11
umitools
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
8616
AMP-T2D consortium
497
Kyle Gaulton, UCSD
393
Bing Ren, UCSD
281
KPMP
139
Jesse Engreitz, Stanford University
96
Stephen Parker, UMich
53
Katalin Susztak, Upenn
19
Xin Sun, UCSD
18
Ines Cebola, Imperial College London
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
9439
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
17
community
5
ITG
Collection Tags
2635
UK_Biobank
2499
EpiMap
1130
ChIP-Atlas
875
ENCODE
636
DGA
533
AMP
421
T1D
406
T2DKP
316
pyxis
281
KPMP
219
BLUEPRINT
174
4DN
172
T2DKP
151
GTEx
110
T2D
101
eQTLCatalogue
100
CMDGA
67
HPAP
26
FNIH_projects-heart
12
FNIH_projects-liver