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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
HiC
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
cell line
0
in vitro differentiated cells
Biosample term
63
HeLa-S3
60
A549
51
H1-hESC
46
neural progenitor cell
42
hematopoietic multipotent progenitor cell
39
K562
23
MCF-7
22
EndoC_BH1
22
adipocyte
19
HFFc6
17
induced pluripotent stem cell
16
H9
14
GM12878
14
HepG2
14
embryonic stem cell
11
breast cancer cell
11
cardiomyocytes
10
SK-N-DZ
10
lymphoblastoid cell line
10
lymphocyte
10
mesenchymal stem cell
10
pituitary stalk
10
progenitor cell of endocrine pancreas
9
22Rv1
9
Rhabdomyosarcoma
9
SK-N-SH
9
cardiac muscle cell
9
endodermal cell
9
endometrium adenocarcinoma
9
extended pluripotent stem (EPS) cells
9
gastric cancer cell
9
immortal human breast epithelial cell line cell
8
NAMALWA cell
8
cardiomyocytes (cardiac muscle cell)
8
neuroblastoma cell
7
B-lymphoblastoid cell line
7
HAP-1
7
HEK293
7
HT-29
7
IMR-90
7
KARPAS-422 cell
7
LNCaP clone FGC
7
MM.1S
7
OCI-LY7
7
PC-9
7
T47D
7
WI38
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
mesendoderm
7
mesodermal cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM18507
6
GM19240
6
GM23248
6
H7-hESC
6
HCT116
6
HL-60
6
LHCN-M2
6
LoVo cell
6
MG63
6
PC-3
6
RPMI8226
6
RWPE1
6
SGBS preadipocytes
6
SK-N-MC
6
SW480
6
WERI-Rb-1
6
bipolar neuron
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
dendritic cell
6
hESC cell
6
iPSC derived cell line
6
liposarcoma
6
muscle cell
6
neuroblastoma cell line
6
neuronal stem cell
6
retinal pigment epithelial cell
6
squamous cell lung carcinoma
5
A172
5
A673
5
ACHN
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
Caco-2 cell
5
Caki2
5
CyT49
5
Daoy
5
GM04503
5
GM04504
5
GM10248
5
GM10266
5
GM12875
5
GM19238
5
GM19239
5
H4
5
HUES6
5
HUES8
5
HuH-7
5
Jurkat
5
KBM-7
5
L1-S8
5
LNCAP
5
M059J
5
NT2-D1 cell
5
OCI-LY1
5
Panc1
5
RCC 7860
5
RPMI7951
5
SJCRH30
5
SJSA1
5
SK-MEL-5
5
T-cell acute lymphoblastic leukemia
5
iPS DF 19.11
5
iPS DF 4.7 Cell Line
5
melanoma cell
5
neural cell
5
osteosarcoma
5
renal cell carcinoma
5
smooth muscle cell
5
trophoblast cell
4
ACC112
4
AG08396 cell
4
B cell
4
C4-2B
4
DND-41
4
DOHH2
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM03348
4
GM08714
4
GM12891
4
GM12892
4
GM23338
4
H54
4
HK-2 cell
4
HS-27A
4
HS-5
4
HT1080
4
HUES48
4
HUES64
4
KMS-11
4
KOPT-K1
4
L1-S8R
4
Loucy
4
NB4
4
NCI-H226 cell
4
NCI-H929
4
OCI-LY3
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
RWPE2
4
Rh-4 cell
4
SU-DHL-6
4
U937
4
UCSF-4
4
VCaP cell
4
colon carcinoma
4
ectodermal cell
4
fibroblast of cardiac tissue
4
hepatocyte
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
islet precursor cell
4
neuron
4
olfactory neurosphere cell line
4
rhabdomyosarcoma cell
4
urothelium cell line
3
8988T
3
AG08395 cell
3
AG20443
3
COLO205
3
COLO829
3
CWRU1
3
ES-I3
3
Ewing sarcoma
3
HCT-116 cell
3
HEK293T
3
HPDE6-E6E7
3
HTR-8/Svneo
3
HuH-7.5
3
MCF 10A
3
MDA-MB-231 cell
Date released
1
February, 2024
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type!
binding sites
organ_slims!
adrenal gland
Showing 1 of 1 results
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Download
FileSet
DSR796CMR
released
Annotation file set
: Target gene predictions from Hi-C on lympoblastoid cell lines from 1000G individuals. GM18522
Lab:
AMP-T2D consortium
Project:
AMP