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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
89
heart
86
stomach
80
kidney
72
brain
68
lung
67
muscle of arm
63
HeLa-S3
63
small intestine
62
adrenal gland
60
A549
59
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
H1-hESC
52
left lung
51
CD8-positive, alpha-beta T cell
48
liver
47
neural progenitor cell
47
thymus
45
right lung
44
B cell
42
hematopoietic multipotent progenitor cell
right kidney
40
renal cortex interstitium
40
renal pelvis
39
K562
39
endothelial cell
39
retina
36
hepatocyte
36
left kidney
34
heart left ventricle
33
spinal cord
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
macrophage
30
adipose tissue
30
fibroblast
27
regulatory T cell
25
adipocyte
25
smooth muscle cell
25
tibial nerve
23
MCF-7
23
T-helper 1 cell
23
natural killer cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
caudate nucleus
22
epithelial cell of proximal tubule
22
pericyte cell
21
T-helper 17 cell
21
foreskin keratinocyte
21
glomerular endothelial cell
21
subcutaneous adipose tissue
20
coronary artery
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
heart right ventricle
19
mononuclear cell
19
right atrium auricular region
18
HFFc6
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
mesenchymal stem cell
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
T-helper 2 cell
17
astrocyte
17
muscle of trunk
17
omental fat pad
16
chorionic villus
16
induced pluripotent stem cell
16
keratinocyte
16
skeletal muscle tissue
16
testis
15
CD4-positive, alpha-beta T cell
15
H9
15
ascending aorta
15
cerebellum
15
fibroblast of cardiac tissue
15
foreskin fibroblast
15
frontal cortex
15
layer of hippocampus
15
neutrophil
14
GM12878
14
cardiac muscle cell
14
embryonic stem cell
14
osteoblast
14
putamen
14
upper lobe of left lung
13
HepG2
13
Peyer's patch
13
aorta
13
excitatory neuron
13
fibroblast of lung
13
mammary gland epithelial cell
13
neurosphere
13
retinal pigment epithelial cell
13
skeletal muscle myoblast
13
skeletal muscle satellite cell
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
naive thymus-derived CD4-positive, alpha-beta T cell
breast cancer cell
11
breast epithelium
11
fibroblast of dermis
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
prostate gland
11
right renal pelvis
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
kidney tubule cell
10
lymphoblastoid cell line
10
lymphocyte
10
right renal cortex interstitium
10
thoracic aorta
9
22Rv1
9
SK-N-DZ
9
cardiomyocytes
9
colonic mucosa
9
endothelial cell of hepatic sinusoid
9
esophagus
9
parathyroid adenoma
9
progenitor cell of endocrine pancreas
9
skin fibroblast
9
tongue
9
trophoblast
9
vagina
8
Rhabdomyosarcoma
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
erythroblast
8
gastric cancer cell
8
globus pallidus
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
NAMALWA cell
7
SK-N-SH
7
T47D
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
endodermal cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
kidney glomerular epithelial cell
7
memory B cell
7
mesendoderm
7
neuroblastoma cell
7
renal cortical epithelial cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
IMR-90
6
MM.1S
6
WI38
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
dermis lymphatic vessel endothelial cell
6
diffuse intrinsic pontine glioma
6
fibroblast of breast
6
hypothalamus
6
mature neutrophil
6
middle frontal gyrus
6
mucosa of rectum
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
binding sites
biosample_term_name!
breast cancer cell
right kidney
organ_slims!
pancreas
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP