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Schema
Citing CMDGA
Clear Filters
Annotation type
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
67
muscle of arm
58
muscle of leg
54
muscle of back
25
tibial nerve
20
psoas muscle
19
tibial artery
18
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
13
skeletal muscle satellite cell
11
esophagus muscularis mucosa
10
lower leg skin
9
skeletal muscle fiber
9
stomach smooth muscle
8
limb
7
gastroesophageal sphincter
7
type I muscle cell
7
type II muscle cell
6
GM23248
6
LHCN-M2
6
skeletal muscle cell
5
A673
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
4
femur
4
rectum smooth muscle tissue
3
arm bone
3
leg bone
3
myotube
2
hindlimb muscle
2
muscle of leg
2
forelimb muscle
2
skeletal muscle
1
cardiac muscle myoblast
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
fibroblast of arm
1
hindlimb muscle
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
rectal smooth muscle tissue
1
respiratory system smooth muscle
1
skin - sun exposed (lower leg)
1
skin of forearm
1
smooth muscle tissue
1
somatic muscle myotube
Organ
3
musculature of body
0
limb
Life stage
1
unknown
Date released
2
February, 2021
1
May, 2021
Software used
1
abc
1
encode-ccres
1
macs
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
annotation_type!
binding sites
organ_slims!
placenta
Showing 3 of 3 results
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Download
FileSet
DSR706TCC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE myotube
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR745RPS
released
Annotation file set
: Histone modifications annotation for Muscle Myotube from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR594LRQ
released
Annotation file set
: enhancer-gene predicton of myotube_originated_from_skeletal_muscle_myoblast-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP