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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
4
snATAC-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
67
muscle of arm
58
muscle of leg
54
muscle of back
31
adipose tissue
30
fibroblast
26
adipocyte
22
pericyte cell
21
subcutaneous adipose tissue
20
psoas muscle
18
gastrocnemius medialis
18
mesenchymal stem cell
18
omental fat pad
17
muscle of trunk
16
fibroblast of cardiac tissue
16
skeletal muscle tissue
15
foreskin fibroblast
14
fibroblast of lung
14
osteoblast
13
skeletal muscle satellite cell
11
esophagus muscularis mucosa
11
fibroblast of dermis
11
skin fibroblast
10
hepatic stellate cell
10
pancreatic stellate cell
9
skeletal muscle fiber
9
stomach smooth muscle
7
gastroesophageal sphincter
7
mesangial cell
7
type I muscle cell
7
type II muscle cell
6
GM23248
6
LHCN-M2
6
chondrocyte
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
skeletal muscle cell
6
subcutaneous abdominal adipose tissue
5
cardiac fibroblast
5
A673
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
SJCRH30
5
cartilage tissue
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
fibroblast of the conjunctiva
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
4
HT1080
4
adult endothelial progenitor cell
4
bone tissue
4
brain pericyte
4
cardiac fibroblast
4
fibroblast of gingiva
4
rectum smooth muscle tissue
4
stromal cell of bone marrow
4
visceral abdominal adipose tissue
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
myotube
3
pancreatic quiescent stellate cell
3
preadipocyte
2
hindlimb muscle
2
muscle of leg
2
articular chondrocyte
2
extracellular matrix secreting cell
2
fat cell
2
forelimb muscle
2
luteal cell
2
pulmonary interstitial fibroblast
2
skeletal muscle
2
stromal cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose tissue derived mesenchymal stem cell
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac muscle myoblast
1
cardiac ventricle fibroblast
1
columnar chondrocyte
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
hindlimb muscle
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
quiescent pancreatic stellate cell
1
rectal smooth muscle tissue
1
respiratory system smooth muscle
1
smooth muscle tissue
1
somatic muscle myotube
1
white adipose cell
1
white adipose tissue
Organ
7
musculature of body
0
connective tissue
Life stage
1
unknown
Date released
3
February, 2024
2
November, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
abc
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
5
AMP
2
ENCODE
RFA
4
AMP2
2
ENCODE3
1
AMP
annotation_type!
binding sites
Showing 7 of 7 results
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Download
FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR232VYZ
released
Annotation file set
: Target gene predictions of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR470SUP
released
Annotation file set
: Accessible chromatin annotation of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR928HZI
released
Annotation file set
: Cell type gene expression mean TPM and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP