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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
2
gene expression
2
target gene predictions
1
eQTL
Annotation Category
2
Gene expression levels
2
Target gene links
1
Genetic variant effects
Annotation type Category
3
RNA-seq
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
2
tsv
File set status
5
released
Genome assembly (visualization)
10
hg19
GRCh38
1
hg18
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
42
CD8-positive, alpha-beta T cell
37
islet of Langerhans
31
monocyte
29
heart
29
retina
27
kidney
26
stomach
25
liver
23
A549
23
brain
22
EndoC_BH1
21
endothelial cell
20
adipocyte
20
breast cancer cell
20
pigmented layer of retina
19
B cell
19
CD14-positive monocyte
19
adrenal gland
19
epithelial cell of proximal tubule
19
pancreatic ductal cell
18
embryonic stem cell
18
lung
18
neural progenitor cell
18
placenta
17
adipose tissue
17
glomerular endothelial cell
17
muscle of arm
17
regulatory T cell
17
small intestine
17
thymus
16
induced pluripotent stem cell
16
large intestine
15
H1-hESC
14
hepatocyte
14
muscle of leg
14
pancreatic alpha cell
13
hematopoietic multipotent progenitor cell
13
natural killer cell
13
pancreatic beta cell
13
pancreatic delta cell
12
K562
12
MCF-7
12
T-helper 1 cell
12
common myeloid progenitor, CD34-positive
12
left lung
12
muscle of back
12
neuroblastoma cell
12
spinal cord
11
T-helper 17 cell
11
heart left ventricle
11
keratinocyte
11
macrophage
11
renal pelvis
11
right kidney
10
Rhabdomyosarcoma
10
gastric cancer cell
10
mesenchymal stem cell
10
osteoblast
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
right lung
10
subcutaneous adipose tissue
9
CD4-positive, alpha-beta memory T cell
9
HepG2
9
T cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
pancreas
9
renal cortex interstitium
9
retinal pigment epithelial cell
9
skeletal muscle myoblast
8
B-lymphoblastoid cell line
8
cardiac muscle cell
8
fibroblast
8
fibroblast cell line
8
foreskin fibroblast
8
glomerular visceral epithelial cell
8
mammary epithelial cell
8
ovary
8
pituitary stalk
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
Jurkat
7
T-helper 2 cell
7
cardiomyocytes (cardiac muscle cell)
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
foreskin keratinocyte
7
heart right ventricle
7
left kidney
7
mammary gland epithelial cell
7
mature neutrophil
7
neuronal stem cell
7
neutrophil
7
psoas muscle
7
sigmoid colon
6
Chondroid Chordoma
6
IMR-90
6
KARPAS-422 cell
6
body of pancreas
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of cardiac tissue
6
hESC cell
6
layer of hippocampus
6
mesendoderm
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
pancreatic stellate cell
6
skeletal muscle tissue
6
testis
6
trophoblast cell
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta T cell
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HAP-1
5
HCT-116 cell
5
HEK293
5
HL-60
5
HT-29
5
HeLa-S3
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
LoVo cell
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Non-Classical Monocyte
5
SGBS preadipocytes
5
acute myeloid leukemia
5
caudate nucleus
5
coronary artery
5
epithelial cell of prostate
5
fibroblast of lung
5
hepatic stellate cell
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
lymphoblastoid cell line
5
memory B cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
right atrium auricular region
5
smooth muscle cell
5
tibial artery
5
tibial nerve
4
22Rv1
4
Ammon's horn
4
B-lymphocyte
4
CD1c-positive myeloid dendritic cell
4
CD4-positive helper T cell
4
CMK
Organ
5
adipose tissue
5
connective tissue
Life stage
5
adult
Date released
2
September, 2022
1
August, 2021
1
February, 2020
1
January, 2020
Software used
4
r
1
mach2qtl
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
caQTL
candidate regulatory elements
assembly!
GRCh38
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR907MAG
released
Annotation file set
: Target gene predictions for BSS01394 omental fat pad from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR638JIJ
released
Annotation file set
: Target gene predictions for BSS01393 omental fat pad from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR767ENC
released
Annotation file set
: eQTLS in different tissues: omental fat (741 samples)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR332YYL
released
Annotation file set
: Gene expression levels of Adipose omental fat pad from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR439NVX
released
Annotation file set
: Gene expression summary of TPM of adipose visceral omentum from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP