Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
2
bed bed9
1
bigBed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
88
heart
84
stomach
80
kidney
72
brain
68
lung
66
muscle of arm
62
small intestine
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
52
left lung
47
liver
47
thymus
45
right lung
41
right kidney
40
islet of Langerhans
39
renal cortex interstitium
39
renal pelvis
39
retina
36
left kidney
33
spleen
32
heart left ventricle
30
adipose tissue
30
spinal cord
23
tibial nerve
22
body of pancreas
22
sigmoid colon
21
caudate nucleus
20
ovary
20
pancreas
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
psoas muscle
18
heart right ventricle
18
omental fat pad
18
substantia nigra
18
testis
18
thyroid gland
18
transverse colon
17
coronary artery
17
gastrocnemius medialis
17
right atrium auricular region
17
tibial artery
16
cerebellum
16
chorionic villus
16
layer of hippocampus
16
muscle of trunk
16
skeletal muscle tissue
16
upper lobe of left lung
15
ascending aorta
15
endocrine pancreas
15
frontal cortex
14
Peyer's patch
14
prostate gland
14
putamen
14
temporal lobe
13
aorta
12
Ammon's horn
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
left cardiac atrium
11
left renal cortex interstitium
11
left renal pelvis
11
right renal pelvis
11
trophoblast
10
angular gyrus
10
breast epithelium
10
chorion membrane
10
colonic mucosa
10
esophagus
10
lower leg skin
10
right renal cortex interstitium
10
thoracic aorta
10
vagina
9
cingulate gyrus
9
duodenal mucosa
9
eye
9
mucosa of rectum
9
parathyroid adenoma
9
right lobe of liver
9
stomach smooth muscle
9
tongue
8
limb
8
muscle layer of colon
8
muscle layer of duodenum
8
right cardiac atrium
8
urinary bladder
8
uterus
7
amygdala
7
gastroesophageal sphincter
7
globus pallidus
7
hypothalamus
7
midbrain
7
nucleus accumbens
7
occipital lobe
6
Brodmann (1909) area 46
6
anterior cingulate cortex
6
skin of body
6
subcutaneous abdominal adipose tissue
6
superior temporal gyrus
6
umbilical cord
5
C1 segment of cervical spinal cord
5
cartilage tissue
5
cerebellar cortex
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
germinal matrix
5
left ventricle myocardium
5
medulla oblongata
5
middle frontal gyrus
5
pons
4
amnion
4
bone tissue
4
cortex of kidney
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
embryonic facial prominence
4
femur
4
inferior parietal cortex
4
mucosa of stomach
4
rectum smooth muscle tissue
4
visceral abdominal adipose tissue
3
arm bone
3
dorsolateral prefrontal cortex
3
germinal center
3
leg bone
3
prefrontal cortex
3
suprapubic skin
2
blood
2
breast carcinoma
2
chorion
2
endometrium cancer
2
fallopian tube
2
first pancreatic bud
2
forelimb muscle
2
kidney epithelium
2
mammary gland
2
middle frontal area 46
2
minor salivary gland
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
2
placental basal plate
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
hindlimb muscle
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
Life stage
5
embryonic
Date released
3
September, 2022
1
February, 2021
1
May, 2019
Software used
2
chromhmm
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
caQTL
variant allelic effects
month_released!
May, 2021
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR877IFL
released
Annotation file set
: Candidate regulatory elements for BSS00385 germinal matrix from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR635QPK
released
Annotation file set
: Target gene predictions for BSS00385 germinal matrix from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772OCZ
released
Annotation file set
: Chromatin states for BSS00385 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR101JAR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE germinal matrix
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR452HUR
released
Annotation file set
: ChromHMM 15-state model for germinal matrix from ENCODE ChIP-seq data. ROADMAP Brain Germinal Matrix Annotation
Lab:
AMP-T2D consortium
Project:
AMP