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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
8
hg19
GRCh38
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
47
small intestine
43
large intestine
18
sigmoid colon
14
transverse colon
11
Peyer's patch
8
colonic mucosa
7
HT-29
7
duodenal mucosa
7
mucosa of rectum
6
SW480
6
muscle layer of colon
6
muscle layer of duodenum
4
HCT-116 cell
4
RKO
3
HCT116
3
enterocyte
3
rectum smooth muscle tissue
2
colon epithelial cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Disease term
2
colorectal adenocarcinoma
Organ
7
intestine
7
large intestine
Life stage
3
adult
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
caQTL
assembly!
GRCh38
Showing 7 of 7 results
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Download
FileSet
DSR691VDL
released
Annotation file set
: Candidate regulatory elements for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR760JIZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HT-29
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR582VBD
released
Annotation file set
: Histone modifications annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168GZG
released
Annotation file set
: Binding sites annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR208YEV
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP