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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
2
gene expression
1
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
2
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
12
hg19
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
49
CD8-positive, alpha-beta T cell
44
A549
41
common myeloid progenitor, CD34-positive
33
B cell
33
hematopoietic multipotent progenitor cell
31
monocyte
27
CD14-positive monocyte
24
neural progenitor cell
23
CD4-positive, alpha-beta memory T cell
23
adipocyte
23
regulatory T cell
22
EndoC_BH1
21
MCF-7
21
endothelial cell
21
epithelial cell of proximal tubule
20
breast cancer cell
19
K562
19
glomerular endothelial cell
19
natural killer cell
19
pancreatic ductal cell
18
T-helper 1 cell
18
embryonic stem cell
18
foreskin keratinocyte
18
hepatocyte
17
T-helper 17 cell
17
foreskin fibroblast
17
trophoblast cell
16
H1-hESC
16
induced pluripotent stem cell
15
CD8-positive, alpha-beta memory T cell
15
keratinocyte
14
endothelial cell of umbilical vein
14
mesenchymal stem cell
14
mononuclear cell
14
pancreatic alpha cell
13
CD4-positive, alpha-beta T cell
13
cardiac muscle cell
13
pancreatic beta cell
13
pancreatic delta cell
13
skeletal muscle myoblast
12
T cell
12
T-helper 2 cell
12
fibroblast of lung
12
mammary epithelial cell
12
neuroblastoma cell
12
neutrophil
12
osteoblast
12
retinal pigment epithelial cell
11
HepG2
11
macrophage
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
HeLa-S3
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
mammary gland epithelial cell
10
neuronal stem cell
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
9
GM12878
9
H9
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
glomerular visceral epithelial cell
9
liposarcoma
9
neurosphere
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
fibroblast
8
fibroblast cell line
8
pituitary stalk
8
smooth muscle cell
7
GM06990
7
GM12864
7
GM12865
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
KARPAS-422 cell
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
mesendoderm
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
MG63
6
MM.1S
6
NAMALWA cell
6
SK-N-MC
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
choroid plexus epithelial cell
6
endometrium adenocarcinoma
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
pancreatic stellate cell
6
skeletal muscle satellite cell
6
skin fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
Glomerular Capillary Endothelial Cell
5
H7-hESC
5
HCT-116 cell
5
HUES6
5
HuH-7
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
KBM-7
5
LNCaP clone FGC
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Non-Classical Monocyte
5
OCI-LY1
5
OCI-LY7
5
PC-9
5
SGBS preadipocytes
5
SJSA1
5
SK-N-DZ
5
SK-N-SH
5
SW480
5
WERI-Rb-1
5
WI38
5
acute myeloid leukemia
5
dermis blood vessel endothelial cell
5
endodermal cell
5
foreskin melanocyte
5
hepatic stellate cell
5
kidney glomerular epithelial cell
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
kidney tubule cell
5
lymphoblastoid cell line
5
memory B cell
5
myoepithelial cell of mammary gland
5
neural cell
5
osteosarcoma
Organ
7
musculature of body
Life stage
4
adult
1
unknown
Date released
2
February, 2024
2
September, 2022
1
February, 2020
1
February, 2021
1
May, 2022
Software used
4
r
2
macs
1
deeptools
1
encode-ccres
1
samtools
1
umitools
Lab
5
AMP-T2D consortium
2
Stephen Parker, UMich
Project
7
AMP
RFA
5
AMP
2
AMP2
annotation_type!
caQTL
assembly!
GRCh38
biosample_type!
tissue
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR972CPB
released
Annotation file set
: Candidate regulatory elements for BSS01576 skeletal muscle satellite cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR326ORZ
released
Annotation file set
: Target gene predictions for BSS01576 skeletal muscle satellite cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR534XMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of skeletal muscle satellite cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR650BYN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle satellite cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR724QWN
released
Annotation file set
: Cell type chromatin broad peaks and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR919OZT
released
Annotation file set
: Cell type gene expression mean TPM and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR147UBG
released
Annotation file set
: Gene expression levels of Skeletal muscle satellite cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP