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Schema
Citing CMDGA
Clear Filters
Annotation type
gene expression
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
45
kidney
22
right kidney
21
renal pelvis
20
renal cortex interstitium
18
left kidney
6
HEK293
6
glomerular visceral epithelial cell
6
kidney tubule cell
6
left renal cortex interstitium
6
left renal pelvis
6
right renal cortex interstitium
6
right renal pelvis
5
epithelial cell of proximal tubule
5
glomerular endothelial cell
5
kidney glomerular epithelial cell
5
renal cortical epithelial cell
4
cortex of kidney
4
kidney capillary endothelial cell
4
kidney epithelial cell
4
renal cell carcinoma
3
ACHN
3
Caki2
3
RCC 7860
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
Connecting Tubule Cell
2
Cortical Thick Ascending Limb Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
G401
2
Glomerular Capillary Endothelial Cell
2
HEK293T
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Medullary Thick Ascending Limb Cell
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Renin-positive Juxtaglomerular Granular Cell
2
kidney epithelium
1
left kidney
1
glomerular epithelium
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
metanephros
1
nephron tubule
1
parietal epithelial cell
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
renal principal cell
1
ureteric bud
Organ
5
epithelium
5
kidney
Life stage
2
unknown
Date released
2
September, 2022
1
January, 2020
1
May, 2020
1
October, 2022
Software used
2
chromhmm
1
deltasvm
1
macs
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
candidate regulatory elements
gene expression
Showing 5 of 5 results
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Download
FileSet
DSR081IKY
released
Annotation file set
: Binding sites annotation for epithelial cell of proximal tubule (RPTEC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR412AJP
released
Annotation file set
: Target gene predictions for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR129CVZ
released
Annotation file set
: Chromatin states for BSS00310 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR347BGE
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney epithelial cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR184YBQ
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell of proximal tubule from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP