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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
59
HeLa-S3
52
H1-hESC
52
heart
50
kidney
45
stomach
44
islet of Langerhans
43
monocyte
41
brain
40
A549
40
endothelial cell
35
lung
34
adrenal gland
34
liver
34
muscle of arm
34
small intestine
33
K562
33
retina
32
placenta
31
macrophage
31
muscle of leg
30
fibroblast
30
hepatocyte
30
neural progenitor cell
28
large intestine
27
thymus
26
B cell
26
common myeloid progenitor, CD34-positive
26
left lung
25
muscle of back
24
adipose tissue
23
CD14-positive monocyte
23
hematopoietic multipotent progenitor cell
23
pancreatic ductal cell
23
right lung
23
smooth muscle cell
22
EndoC_BH1
22
adipocyte
22
heart left ventricle
22
right kidney
21
epithelial cell of proximal tubule
21
pericyte cell
21
renal pelvis
20
pigmented layer of retina
20
regulatory T cell
20
renal cortex interstitium
20
spinal cord
19
HFFc6
19
glomerular endothelial cell
19
spleen
19
subcutaneous adipose tissue
19
tibial nerve
18
CD4-positive, alpha-beta memory T cell
18
T cell
18
left kidney
18
pancreatic beta cell
17
coronary artery
17
pancreatic alpha cell
16
embryonic stem cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
15
MCF-7
15
T-helper 1 cell
15
body of pancreas
15
keratinocyte
15
pancreas
15
pancreatic acinar cell
15
pancreatic delta cell
15
right atrium auricular region
15
tibial artery
14
CD8-positive, alpha-beta memory T cell
14
T-helper 17 cell
14
astrocyte
14
mesenchymal stem cell
13
GM12878
13
caudate nucleus
13
endothelial cell of umbilical vein
13
excitatory neuron
13
frontal cortex
13
natural killer cell
13
osteoblast
13
retinal pigment epithelial cell
13
trophoblast cell
12
CD8-positive, alpha-beta T cell
12
ascending aorta
12
heart right ventricle
12
mononuclear cell
12
sigmoid colon
11
erythroblast
11
fibroblast of cardiac tissue
11
neutrophil
11
omental fat pad
11
ovary
11
psoas muscle
11
skeletal muscle myoblast
11
skeletal muscle satellite cell
11
substantia nigra
11
thyroid gland
10
Ammon's horn
10
HepG2
10
cerebellum
10
fibroblast of lung
10
foreskin keratinocyte
10
glomerular visceral epithelial cell
10
left cardiac atrium
10
mammary gland epithelial cell
10
pancreatic stellate cell
10
putamen
9
H9
9
aorta
9
cardiac muscle cell
9
cardiomyocytes
9
foreskin fibroblast
9
progenitor cell of endocrine pancreas
9
skeletal muscle tissue
9
testis
9
transverse colon
8
T-helper 2 cell
8
breast cancer cell
8
fibroblast of dermis
8
gastrocnemius medialis
8
lymphoblastoid cell line
8
pituitary stalk
8
skeletal muscle fiber
8
skin fibroblast
7
CD4-positive, alpha-beta T cell
7
cardiomyocytes (cardiac muscle cell)
7
colon epithelial cell
7
endocrine pancreas
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
muscle of trunk
7
naive thymus-derived CD4-positive, alpha-beta T cell
6
CD4-positive helper T cell
6
GM19240
6
HUES8
6
IMR-90
6
KARPAS-422 cell
6
Peyer's patch
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
epithelial cell of prostate
6
hepatic stellate cell
6
iPSC derived cell line
6
layer of hippocampus
6
lymphocyte
6
prostate gland
6
temporal lobe
6
thoracic aorta
6
trophoblast
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
22Rv1
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
GM19238
5
GM19239
5
Glomerular Capillary Endothelial Cell
5
HAP-1
5
HEK293
5
HL-60
Life stage
2
embryonic
Date released
2
September, 2022
1
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
1
abc
1
chromhmm
1
nospecificsoft_customcode
1
r
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
candidate regulatory elements
histone modifications
Showing 6 of 6 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP