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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
3
target gene predictions
2
chromatin state
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
2
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
cell line
Biosample term
131
monocyte
59
HeLa-S3
53
H1-hESC
51
heart
51
kidney
46
neural progenitor cell
46
stomach
44
CD8-positive, alpha-beta T cell
44
islet of Langerhans
43
brain
41
A549
39
endothelial cell
36
liver
35
lung
34
K562
34
adrenal gland
34
placenta
34
small intestine
33
muscle of arm
33
retina
32
hepatocyte
31
muscle of leg
30
B cell
29
large intestine
29
macrophage
28
thymus
26
common myeloid progenitor, CD34-positive
26
left lung
25
fibroblast
25
muscle of back
24
hematopoietic multipotent progenitor cell
24
pancreatic ductal cell
23
CD14-positive monocyte
23
adipose tissue
23
regulatory T cell
23
right lung
22
EndoC_BH1
21
adipocyte
21
heart left ventricle
21
pericyte cell
21
right kidney
21
smooth muscle cell
21
spinal cord
20
breast cancer cell
20
epithelial cell of proximal tubule
20
pigmented layer of retina
20
renal pelvis
19
renal cortex interstitium
19
spleen
18
CD4-positive, alpha-beta memory T cell
18
HFFc6
18
embryonic stem cell
18
glomerular endothelial cell
18
left kidney
18
subcutaneous adipose tissue
17
MCF-7
17
T cell
17
T-helper 1 cell
17
keratinocyte
17
natural killer cell
17
pancreatic beta cell
17
tibial nerve
16
caudate nucleus
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
pancreas
16
pancreatic acinar cell
16
pancreatic alpha cell
15
HepG2
15
T-helper 17 cell
15
astrocyte
15
coronary artery
15
mesenchymal stem cell
15
osteoblast
14
CD8-positive, alpha-beta memory T cell
14
GM12878
14
pancreatic delta cell
14
retinal pigment epithelial cell
14
trophoblast cell
13
body of pancreas
13
excitatory neuron
13
fibroblast of cardiac tissue
13
right atrium auricular region
13
substantia nigra
13
tibial artery
12
endothelial cell of umbilical vein
12
frontal cortex
12
lymphoblastoid cell line
12
mononuclear cell
12
neuroblastoma cell
12
sigmoid colon
11
T-helper 2 cell
11
ascending aorta
11
erythroblast
11
foreskin fibroblast
11
foreskin keratinocyte
11
heart right ventricle
11
neutrophil
11
omental fat pad
11
ovary
11
psoas muscle
11
skeletal muscle myoblast
11
skeletal muscle satellite cell
11
thyroid gland
10
Ammon's horn
10
Rhabdomyosarcoma
10
cerebellum
10
fibroblast of lung
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
mammary gland epithelial cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
putamen
10
skeletal muscle tissue
10
testis
9
aorta
9
cardiac muscle cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
left cardiac atrium
9
liposarcoma
9
transverse colon
8
B-lymphoblastoid cell line
8
H9
8
fibroblast cell line
8
fibroblast of dermis
8
gastrocnemius medialis
8
layer of hippocampus
8
lymphocyte
8
mammary epithelial cell
8
pituitary stalk
8
prostate gland
8
skin fibroblast
8
temporal lobe
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
amygdala
7
bronchial epithelial cell
7
colon epithelial cell
7
endocrine pancreas
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
hepatic stellate cell
7
mature neutrophil
7
memory B cell
7
mesendoderm
7
muscle of trunk
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuronal stem cell
7
upper lobe of left lung
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12865
6
GM19238
6
GM19239
6
HUES8
6
Jurkat
6
Peyer's patch
6
WERI-Rb-1
6
anterior cingulate cortex
6
cardiomyocytes (cardiac muscle cell)
6
chondrocyte
6
endodermal cell
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
plasma cell
6
skeletal muscle fiber
6
smooth muscle cell of the coronary artery
6
trophoblast
6
type I muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
Organ
8
epithelium
8
prostate gland
Life stage
4
unknown
Date released
4
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
Software used
3
macs
2
chromhmm
2
r
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
candidate regulatory elements
variant allelic effects
organ_slims!
trachea
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR120KRM
released
Annotation file set
: Target gene predictions for BSS00309 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR498KQI
released
Annotation file set
: Target gene predictions for BSS00308 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR275EDQ
released
Annotation file set
: Chromatin states for BSS00309 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR660GSF
released
Annotation file set
: Chromatin states for BSS00308 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR783HIA
released
Annotation file set
: Histone modifications annotation for Prostate PrEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR324LJC
released
Annotation file set
: Binding sites annotation for Prostate PrEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR327KAR
released
Annotation file set
: enhancer-gene predicton of epithelial_cell_of_prostate-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008LFO
released
Annotation file set
: Accessible chromatin annotation for Prostate PrEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP