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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
1
variant allelic effects
Annotation Category
4
Target gene links
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
10
ChIP-seq
8
DNase-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
7
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
4
in vitro differentiated cells
4
tissue
Biosample term
25
heart
24
stomach
20
A549
19
CD14-positive monocyte
19
brain
18
kidney
18
muscle of arm
17
adrenal gland
17
small intestine
16
lung
16
muscle of leg
15
large intestine
14
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
13
thymus
12
renal pelvis
12
right kidney
12
right lung
11
B cell
11
hematopoietic multipotent progenitor cell
11
renal cortex interstitium
10
pituitary stalk
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
8
K562
8
heart left ventricle
8
pancreas
8
spleen
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
adipocyte
7
adipose tissue
7
sigmoid colon
6
body of pancreas
6
caudate nucleus
6
dendritic cell
6
endothelial cell of umbilical vein
6
gastrocnemius medialis
6
hepatocyte
6
mononuclear cell
6
ovary
6
psoas muscle
6
retina
6
skeletal muscle myoblast
6
thyroid gland
6
tibial nerve
6
transverse colon
5
cardiac fibroblast
5
T cell
5
coronary artery
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
frontal cortex
5
heart right ventricle
5
muscle of trunk
5
natural killer cell
5
osteoblast
5
regulatory T cell
5
right atrium auricular region
5
tibial artery
4
HeLa-S3
4
Peyer's patch
4
T-helper 1 cell
4
ascending aorta
4
breast epithelium
4
cardiac muscle cell
4
chorion membrane
4
chorionic villus
4
choroid plexus epithelial cell
4
endocrine pancreas
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
globus pallidus
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
mammary gland epithelial cell
4
medulla oblongata
4
mesenchymal stem cell
4
midbrain
4
neural progenitor cell
4
occipital lobe
4
pons
4
putamen
4
renal cortical epithelial cell
4
right renal cortex interstitium
4
right renal pelvis
4
skin fibroblast
4
superior temporal gyrus
4
testis
4
upper lobe of left lung
3
Ammon's horn
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
GM12878
3
H1-hESC
3
H7-hESC
3
HAP-1
3
HT-29
3
HepG2
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
bipolar neuron
3
brain pericyte
3
bronchial epithelial cell
3
cerebellum
3
endometrium adenocarcinoma
3
epithelial cell of proximal tubule
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney capillary endothelial cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left cardiac atrium
3
limb
3
mesendoderm
3
middle frontal gyrus
3
monocyte
3
naive T cell
3
neurosphere
3
omental fat pad
3
prostate gland
3
retinal pigment epithelial cell
3
skeletal muscle cell
3
skeletal muscle tissue
3
smooth muscle cell of the brain vasculature
3
tongue
3
trophoblast
3
urinary bladder
3
uterus
2
hindlimb muscle
2
muscle of leg
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
2
H4
2
H9
2
HCT-116 cell
2
HEK293
2
HL-60
2
HUES6
2
HuH-7
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCAP
Organ
4
brain
4
connective tissue
Life stage
4
adult
1
embryonic
Date released
3
September, 2022
2
June, 2020
1
January, 2020
1
May, 2020
1
May, 2021
Software used
3
macs
3
r
1
abc
1
deltasvm
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
candidate regulatory elements
organ_slims!
placenta
Showing 8 of 8 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323SZR
released
Annotation file set
: Target gene predictions for BSS00386 globus pallidus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR561JAO
released
Annotation file set
: Accessible chromatin annotation for Neural Globus Pallidus from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631KSB
released
Annotation file set
: Variant allelic effects of globus pallidus ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR715IYK
released
Annotation file set
: Accessible chromatin annotation of brain globus pallidus from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP