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Citing CMDGA
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Annotation type
1
variant allelic effects
Annotation Category
1
Genetic variant effects
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
126
monocyte
38
CD8-positive, alpha-beta T cell
27
common myeloid progenitor, CD34-positive
23
CD14-positive monocyte
22
B cell
20
epithelial cell of proximal tubule
19
hepatocyte
19
regulatory T cell
18
CD4-positive, alpha-beta memory T cell
17
glomerular endothelial cell
16
T-helper 1 cell
15
T-helper 17 cell
14
CD8-positive, alpha-beta memory T cell
13
endothelial cell of umbilical vein
13
macrophage
13
mononuclear cell
13
osteoblast
13
pancreatic ductal cell
12
T cell
12
T-helper 2 cell
12
endothelial cell
12
pancreatic beta cell
11
natural killer cell
11
neutrophil
11
pancreatic alpha cell
11
skeletal muscle myoblast
10
fibroblast of lung
10
keratinocyte
10
pancreatic acinar cell
10
pancreatic delta cell
10
trophoblast cell
9
fibroblast
9
foreskin fibroblast
9
mammary epithelial cell
9
mature neutrophil
8
fibroblast of dermis
8
foreskin keratinocyte
8
mammary gland epithelial cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
7
bronchial epithelial cell
7
glomerular visceral epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
6
astrocyte
6
erythroblast
6
fibroblast of cardiac tissue
6
gamma-delta T cell
6
hepatic stellate cell
6
kidney interstitial cell
6
kidney tubule cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
pancreatic stellate cell
6
retinal pigment epithelial cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta T cell
5
T follicular helper cell
5
alternatively activated macrophage
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
choroid plexus epithelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of prostate
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
kidney cortex collecting duct principal cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
mesangial cell
5
pancreatic endothelial cell
5
renal cortical epithelial cell
5
skeletal muscle satellite cell
4
CD1c-positive myeloid dendritic cell
4
adult endothelial progenitor cell
4
aortic endothelial cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
epithelial cell of esophagus
4
fibroblast of breast
4
glutamatergic neuron
4
inflammatory macrophage
4
kidney capillary endothelial cell
4
mast cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
myoepithelial cell of mammary gland
4
myofibroblast cell
4
naive B cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
plasma cell
4
preadipocyte
4
pulmonary artery endothelial cell
4
skeletal muscle cell
4
skin fibroblast
4
smooth muscle cell of the brain vasculature
4
tracheal epithelial cell
4
vascular associated smooth muscle cell
3
S-shaped body
3
Schwann cell
3
aortic adventitial fibroblast
3
blood cell
3
brain microvascular endothelial cell
3
enterocyte
3
fibroblast of the aortic adventitia
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive regulatory T cell
3
pancreatic quiescent stellate cell
3
pre-B acute lymphoblastic leukemia cell
3
renal epithelial cell
3
smooth muscle cell
3
smooth muscle cell of the coronary artery
2
Adipose stromal cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
Ishikawa
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
T-cell
2
Th1 cell
2
Th17 cell
2
activated CD4-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
astrocyte of the spinal cord
2
basal cell
2
brain pericyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
endothelial cell of coronary artery
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid cell
2
erythroid progenitor cell
2
fibroblast of gingiva
2
fibroblast of peridontal ligament
2
fibroblast of the conjunctiva
2
foreskin melanocyte
2
goblet cell
2
head and neck squamous cell carcinoma
2
iris pigment epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
lung microvascular endothelial cell
2
mammary stem cell
2
mantle cell lymphoma cell
2
mesenchymal stem cell
2
myeloid dendritic cell
2
neoplastic cell
2
neuronal stem cell
2
non-pigmented ciliary epithelial cell
2
pancreatic endocrine cell
2
pericyte cell
2
peripheral blood mononuclear cell
2
peripheral blood stem cell
2
peripheral blood-derived erythroblast
2
prostate gland cancer cell
2
pulmonary interstitial fibroblast
2
regular cardiac myocyte
2
renal proximal tubule cell
2
renal vesicle
2
skeletal muscle fiber
2
small cell ovarian carcinoma cell
2
somatic muscle myotube
2
stromal cell of bone marrow
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1a B cell
Organ
1
epithelium
1
prostate gland
Date released
1
February, 2024
Software used
1
deltasvm
Lab
1
Bing Ren, UCSD
Project
1
AMP
RFA
1
AMP
annotation_type!
candidate regulatory elements
month_released!
June, 2020
Showing 1 of 1 results
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Download
FileSet
DSR670LSP
released
Annotation file set
: Variant allelic effects annotation of Luminal epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP