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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
44
brain
34
small intestine
29
large intestine
17
caudate nucleus
14
frontal cortex
13
cerebellum
13
putamen
13
sigmoid colon
13
substantia nigra
11
transverse colon
10
Ammon's horn
10
layer of hippocampus
10
pituitary stalk
10
prostate gland
9
temporal lobe
8
choroid plexus epithelial cell
8
colon epithelial cell
8
epithelial cell of prostate
7
Peyer's patch
7
amygdala
7
hypothalamus
7
midbrain
7
nucleus accumbens
6
22Rv1
6
BE(2)-C
6
HT-29
6
SK-N-DZ
6
SK-N-MC
6
SK-N-SH
6
angular gyrus
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
colonic mucosa
6
enterocyte
6
globus pallidus
5
cardiac fibroblast
5
PC-3
5
RWPE1
5
SW480
5
cingulate gyrus
5
duodenal mucosa
5
medulla oblongata
5
mucosa of rectum
5
pons
4
Brodmann (1909) area 46
4
Daoy
4
HCT-116 cell
4
HCT116
4
LNCAP
4
LNCaP clone FGC
4
U-87 MG
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
enteric smooth muscle cell
4
middle frontal gyrus
4
muscle layer of colon
4
muscle layer of duodenum
3
A172
3
M059J
3
RKO
3
VCaP cell
3
brain microvascular endothelial cell
3
brain pericyte
3
cerebellar cortex
3
dorsolateral prefrontal cortex
3
inferior parietal cortex
3
medulloblastoma
3
prefrontal cortex
3
rectum smooth muscle tissue
2
C4-2B
2
H54
2
RWPE2
2
enterocyte of epithelium of small intestine
2
hippocampal neuron
2
paneth cell
2
pituitary gland
2
small intestine goblet cell
1
brain microvascular endothelial cell
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
intestinal epithelial cell
1
intestinal epithelium
1
locus ceruleus
1
luminal epithelial cell of prostatic duct
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
prostate
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
small intestine - terminal Ileum
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
1
brain
0
intestine
0
prostate gland
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
candidate regulatory elements
Showing 1 of 1 results
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Download
FileSet
DSR383OMT
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Progenitor (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP