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Schema
Citing CMDGA
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Annotation type
3
target gene predictions
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
HiC
1
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
34
small intestine
29
large intestine
21
renal pelvis
13
sigmoid colon
11
transverse colon
8
colon epithelial cell
7
Peyer's patch
6
HT-29
6
colonic mucosa
6
enterocyte
6
left renal pelvis
6
right renal pelvis
5
SW480
5
duodenal mucosa
5
mucosa of rectum
4
HCT-116 cell
4
HCT116
4
enteric smooth muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
3
RKO
3
rectum smooth muscle tissue
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Crypt of Lieberkuhn
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
small intestine - terminal Ileum
Disease term
2
colorectal adenocarcinoma
Organ
4
intestine
4
large intestine
0
ureter
Life stage
2
adult
Date released
2
February, 2024
2
September, 2022
Software used
1
chromhmm
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
candidate regulatory elements
organ_slims!
penis
Showing 4 of 4 results
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Download
FileSet
DSR311TAK
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. wild-type
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162XYA
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. WAPL KD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR292ELJ
released
Annotation file set
: Target gene predictions for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815ZTC
released
Annotation file set
: Chromatin states for BSS00492 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP