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Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
cell line
Biosample term
41
A549
35
lung
26
left lung
23
right lung
10
fibroblast of lung
9
upper lobe of left lung
7
IMR-90
7
type II pneumocyte
6
PC-9
4
type I pneumocyte
3
NCI-H226 cell
3
NCI-H460 cell
2
WI38
2
lung microvascular endothelial cell
1
endothelial cell of artery
1
lung neuroendocrine cell
Disease term
2
lung adenocarcinoma
Organ
6
lung
Life stage
2
unknown
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
1
abc
1
chromhmm
1
r
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
candidate regulatory elements
month_released!
May, 2020
organ_slims!
lymphatic vessel
Showing 6 of 6 results
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Download
FileSet
DSR808UQF
released
Annotation file set
: Target gene predictions for BSS01415 PC-9 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR896RWO
released
Annotation file set
: Chromatin states for BSS01415 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR026WMS
released
Annotation file set
: Histone modifications annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR997DEX
released
Annotation file set
: Binding sites annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR988JBC
released
Annotation file set
: enhancer-gene predicton of PC-9-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR109GCX
released
Annotation file set
: Accessible chromatin annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP