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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
130
monocyte
43
CD8-positive, alpha-beta T cell
39
endothelial cell
32
hepatocyte
29
fibroblast
28
macrophage
27
common myeloid progenitor, CD34-positive
26
B cell
23
CD14-positive monocyte
23
regulatory T cell
21
epithelial cell of proximal tubule
21
pericyte cell
20
smooth muscle cell
19
glomerular endothelial cell
19
pancreatic ductal cell
18
CD4-positive, alpha-beta memory T cell
18
T cell
18
pancreatic beta cell
17
T-helper 1 cell
17
pancreatic alpha cell
16
T-helper 17 cell
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
16
pancreatic delta cell
15
astrocyte
15
natural killer cell
15
osteoblast
14
CD8-positive, alpha-beta memory T cell
14
endothelial cell of umbilical vein
14
keratinocyte
13
mononuclear cell
12
T-helper 2 cell
12
excitatory neuron
12
skeletal muscle myoblast
11
erythroblast
11
neutrophil
11
skeletal muscle satellite cell
11
trophoblast cell
10
fibroblast of lung
10
foreskin fibroblast
10
mammary epithelial cell
10
mammary gland epithelial cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
9
fibroblast of cardiac tissue
9
glomerular visceral epithelial cell
9
mature neutrophil
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
8
bronchial epithelial cell
8
fibroblast of dermis
8
foreskin keratinocyte
8
glutamatergic neuron
8
hepatic stellate cell
8
pancreatic stellate cell
8
retinal pigment epithelial cell
7
CD4-positive, alpha-beta T cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
mesangial cell
7
skin fibroblast
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
alternatively activated macrophage
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
gamma-delta T cell
6
kidney glomerular epithelial cell
6
luminal epithelial cell of mammary gland
6
mast cell
6
mesenchymal stem cell
6
naive B cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
plasma cell
6
renal cortical epithelial cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
choroid plexus epithelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of prostate
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
blood vessel smooth muscle cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of esophagus
4
fibroblast of breast
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
myoepithelial cell of mammary gland
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
smooth muscle cell of the esophagus
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
Organ
3
epithelium
3
heart
Date released
3
November, 2021
Software used
2
macs
1
abc
Lab
3
Bing Ren, UCSD
Project
3
ENCODE
RFA
3
ENCODE3
annotation_type!
candidate regulatory elements
biosample_type!
cell line
organ_slims!
artery
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR291BPF
released
Annotation file set
: Target gene predictions of Endocardial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR347CWT
released
Annotation file set
: Accessible chromatin annotation of Fetal Endocardial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR978SWA
released
Annotation file set
: Accessible chromatin annotation of Endocardial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE