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Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
2
variant allelic effects
1
chromatin state
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
snATAC-seq
1
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
114
monocyte
39
CD8-positive, alpha-beta T cell
27
common myeloid progenitor, CD34-positive
26
endothelial cell
23
CD14-positive monocyte
20
B cell
20
epithelial cell of proximal tubule
20
hepatocyte
20
regulatory T cell
18
CD4-positive, alpha-beta memory T cell
18
glomerular endothelial cell
17
macrophage
15
T-helper 1 cell
15
fibroblast
14
CD8-positive, alpha-beta memory T cell
14
T-helper 17 cell
14
pancreatic ductal cell
13
T cell
13
endothelial cell of umbilical vein
13
mononuclear cell
13
smooth muscle cell
12
natural killer cell
12
osteoblast
11
neutrophil
11
pericyte cell
11
skeletal muscle myoblast
11
trophoblast cell
10
T-helper 2 cell
10
endothelial cell of hepatic sinusoid
10
fibroblast of lung
10
mammary epithelial cell
10
pancreatic acinar cell
10
pancreatic delta cell
9
mammary gland epithelial cell
9
mature neutrophil
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
pancreatic alpha cell
9
pancreatic beta cell
8
bronchial epithelial cell
8
glomerular visceral epithelial cell
7
astrocyte
7
fibroblast of cardiac tissue
7
kidney loop of Henle thin ascending limb epithelial cell
7
skeletal muscle satellite cell
6
CD4-positive, alpha-beta T cell
6
alternatively activated macrophage
6
erythroblast
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
glutamatergic neuron
6
hepatic stellate cell
6
kidney interstitial cell
6
kidney tubule cell
6
naive T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
olfactory receptor cell
6
pancreatic stellate cell
6
retinal pigment epithelial cell
6
skeletal muscle fiber
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
epithelial cell of prostate
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mast cell
5
memory B cell
5
mesangial cell
5
mesenchymal stem cell
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
cardiac muscle cell
4
choroid plexus epithelial cell
4
epithelial cell of esophagus
4
fibroblast of breast
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
kidney epithelial cell
4
luminal epithelial cell of mammary gland
4
myoepithelial cell of mammary gland
4
myofibroblast cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
adipocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
basal cell
3
blood cell
3
bone marrow cell
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
erythroid cell
3
fibroblast of peridontal ligament
3
fibroblast of the aortic adventitia
3
gabaergic neuron
3
iris pigment epithelial cell
3
kidney capillary endothelial cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
leukocyte
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive B cell
3
neoplastic cell
3
non-pigmented ciliary epithelial cell
3
pancreatic A cell
Organ
4
epithelium
4
esophagus
Life stage
2
unknown
Date released
2
February, 2024
2
September, 2022
Software used
2
deltasvm
1
chromhmm
1
r
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
4
AMP
RFA
4
AMP
annotation_type!
candidate regulatory elements
files.file_type!
bigWig
organ_slims!
skin of body
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR005XGT
released
Annotation file set
: Target gene predictions for BSS00307 epithelial cell of esophagus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929IPZ
released
Annotation file set
: Chromatin states for BSS00307 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR545JGJ
released
Annotation file set
: Variant allelic effects annotation of Esophageal epithelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR761QWI
released
Annotation file set
: Variant allelic effects annotation of Esophageal epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP