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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
bed bed9
1
bigWig
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
102
monocyte
36
A549
23
retina
20
common myeloid progenitor, CD34-positive
20
pigmented layer of retina
18
hematopoietic multipotent progenitor cell
18
hepatocyte
17
adipose tissue
17
islet of Langerhans
16
epithelial cell of proximal tubule
16
liver
15
subcutaneous adipose tissue
15
tibial nerve
14
body of pancreas
14
endothelial cell of hepatic sinusoid
13
CD8-positive, alpha-beta T cell
13
adrenal gland
13
caudate nucleus
13
glomerular endothelial cell
13
omental fat pad
12
B cell
12
K562
11
ascending aorta
11
coronary artery
11
right atrium auricular region
11
stomach
11
tibial artery
10
CD8-positive, alpha-beta memory T cell
10
MCF-7
10
cerebellum
10
frontal cortex
10
heart left ventricle
10
mononuclear cell
9
endothelial cell
9
pancreas
9
putamen
9
regulatory T cell
9
spleen
9
substantia nigra
8
Ammon's horn
8
T-helper 1 cell
8
gastrocnemius medialis
8
natural killer cell
8
sigmoid colon
8
thyroid gland
8
transverse colon
7
T cell
7
aorta
7
kidney loop of Henle thin ascending limb epithelial cell
7
ovary
7
psoas muscle
7
right lobe of liver
6
CD14-positive monocyte
6
CD4-positive, alpha-beta memory T cell
6
HeLa-S3
6
Peyer's patch
6
angular gyrus
6
endocrine pancreas
6
endometrium adenocarcinoma
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
layer of hippocampus
6
temporal lobe
6
upper lobe of left lung
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
hypothalamus
5
kidney
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mature neutrophil
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
5
nucleus accumbens
5
pancreatic alpha cell
5
pancreatic beta cell
5
skeletal muscle tissue
5
testis
5
thoracic aorta
5
vagina
4
Brodmann (1909) area 46
4
LNCaP clone FGC
4
T-helper 17 cell
4
T-helper 2 cell
4
T47D
4
bone tissue
4
breast epithelium
4
cartilage tissue
4
cingulate gyrus
4
colonic mucosa
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
duodenal mucosa
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
fibroblast of breast
4
globus pallidus
4
glutamatergic neuron
4
heart
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney interstitial cell
4
lower leg skin
4
mammary gland epithelial cell
4
medulla oblongata
4
midbrain
4
middle frontal gyrus
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive T cell
4
pancreatic delta cell
4
parathyroid adenoma
4
pons
4
prostate gland
4
right cardiac atrium
4
skeletal muscle satellite cell
4
small intestine
4
stomach smooth muscle
4
superior temporal gyrus
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
GM12878
3
Mast Cell
3
adipocyte
3
adult endothelial progenitor cell
3
alternatively activated macrophage
3
cerebellar cortex
3
heart right ventricle
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
Organ
4
heart
Life stage
37
embryonic
4
adult
4
fetal
3
child
Date released
2
September, 2022
1
February, 2021
1
January, 2020
Software used
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
candidate regulatory elements
biosample_term_name!
AG09319 cell
renal cortex interstitium
Showing 4 of 4 results
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Download
FileSet
DSR144ZJD
released
Annotation file set
: Target gene predictions for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR994QRK
released
Annotation file set
: Accessible chromatin annotation of heart adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP