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Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
3
accessible chromatin
2
variant allelic effects
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
5
DNase-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
24
kidney
19
epithelial cell of proximal tubule
17
glomerular endothelial cell
9
glomerular visceral epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
4
HEK293
4
cortex of kidney
4
kidney connecting tubule epithelial cell
4
kidney glomerular epithelial cell
4
renal cortical epithelial cell
3
S-shaped body
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
renal pelvis
2
kidney capillary endothelial cell
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
left renal cortex interstitium
2
left renal pelvis
2
metanephros
2
renal cell carcinoma
2
renal connecting tubule
2
renal cortex interstitium
2
renal principal cell
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
ureteric bud
1
left kidney
1
ACHN
1
Caki2
1
RCC 7860
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
epithelial cell of distal tubule
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
parietal epithelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
Organ
5
kidney
5
ureter
Life stage
2
fetal
Date released
September, 2022
2
January, 2020
2
May, 2020
1
June, 2020
Software used
3
macs
2
deltasvm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
candidate regulatory elements
month_released!
September, 2022
Showing 5 of 5 results
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Download
FileSet
DSR370KIZ
released
Annotation file set
: Accessible chromatin annotation for Kidney Kidney Pelvis from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497ZOK
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney renal pelvis DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR694REX
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney left renal pelvis DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR458LRF
released
Annotation file set
: Accessible chromatin annotation of kidney left renal pelvis from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR570SAY
released
Annotation file set
: Accessible chromatin annotation of kidney renal pelvis from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP