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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
59
HeLa-S3
50
H1-hESC
46
heart
42
stomach
38
A549
38
brain
38
kidney
36
islet of Langerhans
35
lung
33
adrenal gland
33
muscle of arm
33
small intestine
31
K562
30
placenta
29
liver
29
muscle of leg
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
25
muscle of back
25
thymus
24
monocyte
23
CD14-positive monocyte
22
adipose tissue
22
endothelial cell
22
right lung
21
hematopoietic multipotent progenitor cell
21
right kidney
20
B cell
20
epithelial cell of proximal tubule
19
HFFc6
19
heart left ventricle
19
renal cortex interstitium
19
renal pelvis
18
CD4-positive, alpha-beta memory T cell
18
left kidney
17
glomerular endothelial cell
17
induced pluripotent stem cell
16
body of pancreas
16
hepatocyte
16
macrophage
16
neural progenitor cell
16
regulatory T cell
16
spinal cord
16
subcutaneous adipose tissue
15
adipocyte
15
tibial nerve
14
CD8-positive, alpha-beta memory T cell
14
T-helper 1 cell
14
T-helper 17 cell
14
caudate nucleus
14
coronary artery
14
spleen
13
EndoC_BH1
13
fibroblast
13
smooth muscle cell
12
MCF-7
12
T cell
12
frontal cortex
12
heart right ventricle
12
mononuclear cell
12
pancreatic ductal cell
12
right atrium auricular region
12
tibial artery
12
trophoblast cell
11
GM12878
11
ascending aorta
11
cardiomyocytes
11
cerebellum
11
endothelial cell of umbilical vein
11
sigmoid colon
11
substantia nigra
10
T-helper 2 cell
10
fibroblast of lung
10
mesenchymal stem cell
10
natural killer cell
10
omental fat pad
10
ovary
10
psoas muscle
10
thyroid gland
9
CD8-positive, alpha-beta T cell
9
H9
9
aorta
9
extended pluripotent stem (EPS) cells
9
gastrocnemius medialis
9
keratinocyte
9
left cardiac atrium
9
neutrophil
9
pancreas
9
skeletal muscle tissue
8
Ammon's horn
8
cardiomyocytes (cardiac muscle cell)
8
chorionic villus
8
endocrine pancreas
8
fibroblast of dermis
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
mammary gland epithelial cell
8
pancreatic acinar cell
8
pericyte cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
putamen
8
retina
8
transverse colon
7
HepG2
7
dendritic cell
7
embryonic stem cell
7
fibroblast of cardiac tissue
7
foreskin fibroblast
7
layer of hippocampus
7
lymphocyte
7
muscle of trunk
7
pancreatic delta cell
7
skeletal muscle myoblast
7
testis
6
CD4-positive, alpha-beta T cell
6
Peyer's patch
6
SK-N-SH
6
alternatively activated macrophage
6
amygdala
6
angular gyrus
6
anterior cingulate cortex
6
astrocyte
6
cardiac muscle cell
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
chorion membrane
6
endometrium adenocarcinoma
6
erythroblast
6
esophagus
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
kidney interstitial cell
6
kidney loop of Henle thin ascending limb epithelial cell
6
lymphoblastoid cell line
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle satellite cell
6
temporal lobe
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
Life stage
2
embryonic
Date released
2
September, 2022
1
March, 2020
1
May, 2021
Software used
macs
1
abc
1
chromhmm
1
nospecificsoft_customcode
1
r
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
annotation_type!
candidate regulatory elements
biosample_term_name!
common myeloid progenitor, CD34-positive
files.file_type!
bigWig
software_used.software.name!
macs
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP